Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N17
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   1.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.6  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/39 (23%), Positives = 15/39 (38%)
 Frame = +1

Query: 412 HIQTHANGSNVLISSCDLKL*LSYLINQHLRHISMIYNY 528
           H++ H          C        ++N HL+  S +Y Y
Sbjct: 7   HLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQY 45


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 176 VVYII*VKGSHCHTNIPSKHSIPAKILPCGYP 81
           VV  +  + +H   +  S HS+  + LPC  P
Sbjct: 600 VVNALAEQAAHASASEESVHSMELRTLPCLLP 631


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 176 VVYII*VKGSHCHTNIPSKHSIPAKILPCGYP 81
           VV  +  + +H   +  S HS+  + LPC  P
Sbjct: 568 VVNALAEQAAHASASEESVHSMELRTLPCLLP 599


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 359 VNTLTVVCTNFPSRHITHKFSFSIPISAKLF*ILSI 252
           + T TV+  N   +  T+ + FS+ IS  +  +L +
Sbjct: 59  ITTCTVIIKNPAMQTATNYYLFSLAISDLILLVLGL 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,471
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)