Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N17
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04630.1 68414.m00458 expressed protein                             50   1e-06
At2g33220.1 68415.m04070 expressed protein                             49   2e-06
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril...    31   0.54 
At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family pr...    31   0.54 
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    27   8.7  

>At1g04630.1 68414.m00458 expressed protein
          Length = 143

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
 Frame = +3

Query: 105 SGYAMFAGYIGVTVGALYLYNINYK--QIIKEQIEMRSAKMAVYPMLLAERDREYLKQLR 278
           S  AMF    G     +Y      K  + +KE  E  +A+  + P+L AE D  ++ + +
Sbjct: 45  SAMAMFLAVSGAFAWGMYQVGQGNKIRRALKE--EKYAARRTILPILQAEEDERFVSEWK 102

Query: 279 RNRDAEAELMRDVPGWEVGTYYGERVY---KLVPPDT 380
           +  + EA++M+DVPGW+V    GE VY   + +PP T
Sbjct: 103 KYLEYEADVMKDVPGWKV----GENVYNSGRWMPPAT 135


>At2g33220.1 68415.m04070 expressed protein
          Length = 143

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
 Frame = +3

Query: 105 SGYAMFAGYIGVTVGALYLYNINYK--QIIKEQIEMRSAKMAVYPMLLAERDREYLKQLR 278
           S  A+F    G     +Y      K  + +KE  E  +A+ A+ P+L AE D  ++ + +
Sbjct: 45  SAMAIFLTVSGAFAWGMYQVGQGNKIRRALKE--EKYAARRAILPILQAEEDERFVSEWK 102

Query: 279 RNRDAEAELMRDVPGWEVGTYYGERVY---KLVPPDT 380
           +  + EA++M+DVPGW+V    GE VY   + +PP T
Sbjct: 103 KYLEYEADVMKDVPGWKV----GENVYNSGRWMPPAT 135


>At5g52490.1 68418.m06512 fibrillarin, putative similar to
           fibrillarin from {Xenopus laevis} SP|P22232, {Mus
           musculus} SP|P35550, {Homo sapiens} SP|P22087
          Length = 292

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -1

Query: 328 SHPGTSRISSASASLFLRSCFKYSLSLSANSIGYTAILAE 209
           +HP  + I S +AS FL+S   + +S+ ANSI  T I AE
Sbjct: 212 NHPEQANILSLNASYFLKSGGHFMISIKANSIDST-IAAE 250


>At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 301

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 168 INYKQIIKEQIEMRSAKMA-VYPMLLAERDREYLKQLRRNRD 290
           INY Q +++Q+E  S K+A V P +  + DR   K L ++RD
Sbjct: 191 INYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKDLLQSRD 232


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
           contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 321 GWEVGTYYGERVY-----KLVPPDTLVEPIFHEYYAHTDPREWFKR 443
           G   G Y  +++Y       +P D LV PI + Y A++ P ++FK+
Sbjct: 127 GQMCGPYTQQQLYDGLSTNFLPEDLLVYPIINGYTANSVPLKYFKQ 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,024,807
Number of Sequences: 28952
Number of extensions: 234155
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)