Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N16
(553 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13; Endopt... 112 4e-24
UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gamb... 95 7e-19
UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8... 94 2e-18
UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella ve... 87 2e-16
UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44; Coelom... 86 4e-16
UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1; ... 75 1e-12
UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 ... 72 8e-12
UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma... 69 1e-10
UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=1... 66 5e-10
UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17; Magn... 65 1e-09
UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3; Ixodoid... 64 2e-09
UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=... 59 8e-08
UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8; Pezizom... 54 2e-06
UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7; Pezizomy... 54 2e-06
UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2; Caenorh... 52 9e-06
UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1; F... 51 2e-05
UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 50 4e-05
UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthor... 48 2e-04
UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150, w... 47 3e-04
UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2; Cryptos... 46 8e-04
UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2; Dictyos... 45 0.001
UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9; Trypano... 44 0.002
UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1; ... 37 0.27
UniRef50_A4S554 Cluster: Ribosomal protein L28, component of cyt... 36 0.47
UniRef50_UPI00006CFBC8 Cluster: hypothetical protein TTHERM_0048... 36 0.83
UniRef50_UPI00006CB6E0 Cluster: Zinc finger, ZZ type family prot... 35 1.1
UniRef50_Q8IM40 Cluster: Putative uncharacterized protein; n=4; ... 34 1.9
UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing pr... 34 2.5
UniRef50_A7HRP5 Cluster: Glutamine synthetase catalytic region; ... 33 5.8
UniRef50_A2QXB7 Cluster: Similarity to hypothetical protein enco... 33 5.8
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:... 32 7.7
>UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13;
Endopterygota|Rep: 60S ribosomal protein L28 -
Drosophila melanogaster (Fruit fly)
Length = 144
Score = 112 bits (270), Expect = 4e-24
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = +3
Query: 57 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
SSHLNW+IIRNNNAFL+KK ++KKPFS EPNN+ +++SYRY+G++HKK +GVV D+KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 237 FTIVYKKAKATNKP 278
FT V KK K +P
Sbjct: 64 FTAVLKKGKYAQRP 77
Score = 60.1 bits (139), Expect = 3e-08
Identities = 30/48 (62%), Positives = 35/48 (72%)
Frame = +1
Query: 286 NIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAILRSQRP 429
N +R FKAG RR L K K LL + YR DLT+A LRRASA+LRSQ+P
Sbjct: 80 NTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKP 127
>UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000014265 - Anopheles gambiae
str. PEST
Length = 158
Score = 95.5 bits (227), Expect = 7e-19
Identities = 39/74 (52%), Positives = 57/74 (77%)
Frame = +3
Query: 57 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
SSHLNW+I+R++NAFL+K+ +I+KPFS EP N+TNL+S+RY+GL+H K + + ++KG
Sbjct: 4 SSHLNWLIVRDHNAFLLKRRDIRKPFSTEPGNLTNLSSFRYSGLVHHKTI-TITPAEKKG 62
Query: 237 FTIVYKKAKATNKP 278
VY + K NKP
Sbjct: 63 VNFVYNRKKVLNKP 76
Score = 54.0 bits (124), Expect = 2e-06
Identities = 27/46 (58%), Positives = 31/46 (67%)
Frame = +1
Query: 292 IRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAILRSQRP 429
++ K G RR L K ++KAN YR DL A LRRASAILRSQRP
Sbjct: 81 VKVTLKEGPRRTLKKIANMMKANRYRADLRGAALRRASAILRSQRP 126
>UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8;
Neoptera|Rep: Ribosomal protein L28-like protein -
Maconellicoccus hirsutus (hibiscus mealybug)
Length = 139
Score = 94.3 bits (224), Expect = 2e-18
Identities = 43/75 (57%), Positives = 53/75 (70%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 233
MS+ L WMI RNNNA+L+KK +IKKPFS EP N+ N+ S+RYNGL+ K V V D K
Sbjct: 1 MSADLYWMITRNNNAYLLKKRDIKKPFSTEPGNLKNVASFRYNGLVQPKTVDVRAAKDGK 60
Query: 234 GFTIVYKKAKATNKP 278
GF + K+AK NKP
Sbjct: 61 GFVVTTKRAKQQNKP 75
Score = 46.4 bits (105), Expect = 4e-04
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +1
Query: 310 AGARRFLFKAKRLLKANHYRTDLTKATLRRASAILRSQR 426
AG RR L+K +R L YR DLT+ LR+ASAIL SQ+
Sbjct: 86 AGPRRSLYKLRRYLDGGKYRKDLTQVALRKASAILESQK 124
>UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 137
Score = 87.4 bits (207), Expect = 2e-16
Identities = 42/75 (56%), Positives = 51/75 (68%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 233
MSS L W IIRNN+ FLV+ K +KEPNNVT LN+++YNGL++KK VGV P K
Sbjct: 1 MSSDLQWSIIRNNSCFLVRSQG--KTLTKEPNNVTGLNAFKYNGLVNKKVVGVDAAPSGK 58
Query: 234 GFTIVYKKAKATNKP 278
G I +K KA NKP
Sbjct: 59 GVVITTRKNKAANKP 73
Score = 36.7 bits (81), Expect = 0.36
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 316 ARRFLFKAKRLLKANHYRTDLTKATLRRASAILRSQRP 429
+RR L + + N+YR DL +RRA AILRSQ+P
Sbjct: 86 SRRTLKTIEGVCDKNYYRMDLKDPAMRRACAILRSQKP 123
>UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44;
Coelomata|Rep: 60S ribosomal protein L28 - Homo sapiens
(Human)
Length = 137
Score = 86.2 bits (204), Expect = 4e-16
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 233
MS+HL WM++RN ++FL+K+ K+ +S EPNN+ NS+RYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 234 GFTIVYKKAKATNKPVXEHYPSSI-QSWSEEVSFQSQEIAKGKSLPYRPD 380
G +V K+ KP + ++I ++ +S I K K YRPD
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNK---YRPD 105
Score = 46.4 bits (105), Expect = 4e-04
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +1
Query: 292 IRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 432
+R AR L + +++ N YR DL A +RRASAILRSQ+P+
Sbjct: 78 VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124
>UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 221
Score = 74.5 bits (175), Expect = 1e-12
Identities = 31/75 (41%), Positives = 50/75 (66%)
Frame = +3
Query: 57 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
S L W+++RNN++F+VK+ I + FS+EP N+ L+SY+Y+GL++ KAVG+ KG
Sbjct: 3 SQDLQWLLVRNNSSFIVKQKGIGRIFSREPRNLVQLHSYKYSGLVNAKAVGIEAAKSGKG 62
Query: 237 FTIVYKKAKATNKPV 281
I K AK ++ +
Sbjct: 63 VVITTKNAKQSSSAI 77
>UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 -
Suberites domuncula (Sponge)
Length = 136
Score = 72.1 bits (169), Expect = 8e-12
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKKP---FSKEPNNVTNLNSYRYNGLIHKKAVGVVENP 224
MS+ L W +I+N+++FL+++ + F+ EPNNV N NS+++NGL++KK VGV
Sbjct: 1 MSAELQWELIKNSSSFLLRRKGPRGSGVTFTTEPNNVMNKNSFKFNGLVNKKVVGVSSAA 60
Query: 225 DRKGFTIVYKKAKATNKPVXEHYPSSIQSWSEEVSFQSQEIAKG-KSLPYRPD 380
D KG K++K +KP + + + S +F+S I K + YRPD
Sbjct: 61 DNKGVLFKTKRSKVVSKPA-KMFVRATLSKDRRRAFKS--IKKNLECTEYRPD 110
Score = 39.5 bits (88), Expect = 0.051
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 319 RRFLFKA-KRLLKANHYRTDLTKATLRRASAILRSQRP 429
RR FK+ K+ L+ YR DL + +RRASAIL SQRP
Sbjct: 91 RRRAFKSIKKNLECTEYRPDLAELAVRRASAILSSQRP 128
>UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma
japonicum|Rep: Ribosomal protein L28 - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 68.5 bits (160), Expect = 1e-10
Identities = 32/75 (42%), Positives = 47/75 (62%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 233
MSSHL W +I+NN+ FL+K+ + FS++P N+ N N +RY G +HKKA+G+ E K
Sbjct: 1 MSSHLIWDLIKNNHCFLMKRG--PECFSRDPLNLKNKNCFRYCGPVHKKAIGIKEERYGK 58
Query: 234 GFTIVYKKAKATNKP 278
G + K +KP
Sbjct: 59 GVVVTTKNVAKDHKP 73
>UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=19;
Neodiplogasteridae|Rep: Large subunit ribosomal protein
28 - Pristionchus sp. 11 RS5228
Length = 127
Score = 66.1 bits (154), Expect = 5e-10
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +3
Query: 78 IIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKK 257
+IRNN+AFL ++ I+K FS+EP N+ +NS YNGL + KAVGV D K + KK
Sbjct: 2 VIRNNSAFLRRQRGIQKAFSREPLNLKGINSPNYNGLTNNKAVGVTLAEDNKSVVVSVKK 61
Query: 258 AKATNKPVXEHYPSSIQSWSEEVSFQS-QEIAKGKS 362
N P ++I+ +S Q + KG++
Sbjct: 62 TGKKNLPAQSVIKTTIKRGGARGIVKSVQGLVKGRN 97
>UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17;
Magnoliophyta|Rep: 60S ribosomal protein L28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 143
Score = 64.9 bits (151), Expect = 1e-09
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Frame = +3
Query: 66 LNWMIIRNNNAFLVK---KANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
L W I++NNN FLVK + N K FSKE NN+TN++SY+++GL +KK V + +
Sbjct: 8 LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67
Query: 237 FTIVYKKAKATNKP 278
+ K K NKP
Sbjct: 68 VVLATTKTKKQNKP 81
>UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3;
Ixodoidea|Rep: 60S ribosomal protein L28 - Argas
monolakensis
Length = 142
Score = 64.1 bits (149), Expect = 2e-09
Identities = 32/75 (42%), Positives = 44/75 (58%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 233
+S WM++RN ++FLVKK NIKK FS +P N + + R+ G I K+A+ V + K
Sbjct: 2 VSRTYRWMVVRNCSSFLVKKRNIKKWFSTDPLNPKGVYANRFAGTIKKRALTVEPHSSGK 61
Query: 234 GFTIVYKKAKATNKP 278
G T VY K KP
Sbjct: 62 GVTFVYLAHKGATKP 76
Score = 35.9 bits (79), Expect = 0.63
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 313 GARRFLFKAKRLLKA-NHYRTDLTKATLRRASAILRSQRPI 432
G RR + + +K +YR DL + RRASAIL+SQR I
Sbjct: 88 GPRRTMVSIRNWIKGMGYYRRDLRRVCQRRASAILKSQRAI 128
>UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=1;
Schizosaccharomyces pombe|Rep: Probable 60S ribosomal
protein L28e - Schizosaccharomyces pombe (Fission yeast)
Length = 134
Score = 58.8 bits (136), Expect = 8e-08
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKK-PFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDR 230
+S+ L W +IR+NN FLVK+ F++EP NV+ N+ R++GL + KAVGV N R
Sbjct: 3 VSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPR 62
Query: 231 KGFTIVYKKAKATNKPVXEHYPSSIQSWSEEVSFQSQEIAKGKSLPYRPD 380
I K KP I + S +++S G++ YR D
Sbjct: 63 GVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRT-GYRDD 111
Score = 33.1 bits (72), Expect = 4.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 364 YRTDLTKATLRRASAILRSQRP 429
YR DL K ++ RASAIL SQRP
Sbjct: 108 YRDDLVKVSVARASAILSSQRP 129
>UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8;
Pezizomycotina|Rep: 60S ribosomal protein L28 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 157
Score = 54.4 bits (125), Expect = 2e-06
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKK-ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDR 230
+SS L W I RN NAFLVK+ FS++P N+ N S++Y G + KAVG V+ +
Sbjct: 8 VSSDLVWQITRNQNAFLVKRRTGGGSQFSRDPLNLQNKQSFKYAGYANTKAVG-VQATEN 66
Query: 231 KGFTIVYKKAKATNKP 278
G ++ KK +P
Sbjct: 67 GGVVVITKKPGNPQQP 82
>UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7;
Pezizomycotina|Rep: RIB40 genomic DNA, SC111 -
Aspergillus oryzae
Length = 157
Score = 54.4 bits (125), Expect = 2e-06
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKK-ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDR 230
+SS L W + RN NAFLVK+ + FS++P N+ N +S++Y G + KA+G V+ +
Sbjct: 8 VSSDLVWQLTRNQNAFLVKRNSGGGSQFSRDPLNLQNKHSFKYAGYANTKAIG-VQPTEN 66
Query: 231 KGFTIVYKKAKATNKP 278
G ++ KK+ +P
Sbjct: 67 GGVVVLTKKSGNAQQP 82
>UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L28 -
Caenorhabditis elegans
Length = 126
Score = 52.0 bits (119), Expect = 9e-06
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 233
MS L W +IRNN+AFL + I K FS E N+ +NS +Y+GL +K A+ V + K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58
Query: 234 GFTIVYKKAK 263
G + K K
Sbjct: 59 GVVVSTKNEK 68
>UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1;
Filobasidiella neoformans|Rep: 60s ribosomal protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 156
Score = 50.8 bits (116), Expect = 2e-05
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 233
MSS L W+++RN N+F VK + FS+E N+ N ++++Y+GL + K V + +P
Sbjct: 1 MSSDLTWLLVRNWNSFQVKGGH-GPVFSREKGNLLNKSAHKYSGLANSKVVSI--HPSAA 57
Query: 234 GFTIVYKKAKATNKP 278
G I K KA KP
Sbjct: 58 G-GITITKIKADAKP 71
>UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 183
Score = 50.0 bits (114), Expect = 4e-05
Identities = 25/80 (31%), Positives = 41/80 (51%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 233
+S+ W ++ NA+LVK+ I S++P + NL+++ +GL H KAVGV
Sbjct: 48 VSNDFIWECTKSTNAYLVKRKGIDTTLSRDPYALNNLSTHYESGLSHDKAVGVHYCKPSG 107
Query: 234 GFTIVYKKAKATNKPVXEHY 293
++ K K NKP +
Sbjct: 108 KICVITKVVKNANKPAKSRH 127
>UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthora
infestans|Rep: Ribosomal protein L28 - Phytophthora
infestans (Potato late blight fungus)
Length = 139
Score = 47.6 bits (108), Expect = 2e-04
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +3
Query: 57 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
S L W++ +N ++FLVK+ F++E N+ N N +Y+GL KAV + D+K
Sbjct: 3 SDTLTWLLTKNTSSFLVKRNG--NEFAREKFNLLNRNCRKYSGLASTKAVD-ISISDKK- 58
Query: 237 FTIVYKKAKATNKP 278
T+ K KAT KP
Sbjct: 59 VTLTTKIEKATKKP 72
>UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_150,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 147
Score = 46.8 bits (106), Expect = 3e-04
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVV 215
MS + W +++ NNAFLVK+ + S +P N T + +Y G I K AVGVV
Sbjct: 1 MSQQVLWEVVKGNNAFLVKRNGL--TLSTDPFNNTGVQTYSSTGFISKNAVGVV 52
>UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L28 -
Cryptosporidium parvum Iowa II
Length = 127
Score = 45.6 bits (103), Expect = 8e-04
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +3
Query: 57 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
S+ L W ++ N +F+ K N F+ EP N+ NLN+ +Y+GL ++++ + P+ G
Sbjct: 3 STELLWQCVKKNTSFI--KKNNGFTFTSEPFNIMNLNTLKYSGLAARRSISMDLVPNSNG 60
Query: 237 FTIVYKKAKATNK 275
+ K AK T K
Sbjct: 61 KLV--KNAKITKK 71
>UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2;
Dictyostelium discoideum|Rep: 60S ribosomal protein L28
- Dictyostelium discoideum (Slime mold)
Length = 132
Score = 44.8 bits (101), Expect = 0.001
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGV 212
MS L W II+ NNAFL K++ S EP N+ N NS +Y+GL + + V
Sbjct: 1 MSQDLVWSIIKKNNAFL--KSSHGLTLSAEPGNLRNKNSLKYSGLARRTTIDV 51
>UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9;
Trypanosomatidae|Rep: 60S ribosomal protein L28 -
Trypanosoma cruzi
Length = 146
Score = 44.4 bits (100), Expect = 0.002
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +3
Query: 57 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLN-SYRYNGLIHKKAVGVVENPDRK 233
S+ L W+++R N+ FL K+ I+ S +P N N N + R+ G ++ KA V DR
Sbjct: 4 STDLQWLLVRQNSKFLQKRNGIR--LSSDPFN-NNANWTKRHAGFLNTKAAVVKTKGDR- 59
Query: 234 GFTIVYKKAKATNKPVXEHYPSSIQSWSEEVSFQSQEIA 350
+ K KA NKP Y ++ E S S+ +A
Sbjct: 60 -ILVTTKDGKAGNKP-KSMYKKAVMDAGVEASVVSKAVA 96
>UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 192
Score = 37.1 bits (82), Expect = 0.27
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +3
Query: 54 MSSHLNWMIIRNNNAFLVKK-ANIKKPFSKEPNNVTNLNSYR 176
+SS L W + RN NA+LVK+ + FS++P NV N +S++
Sbjct: 8 VSSDLVWQLTRNQNAYLVKRNTHGGVQFSRDPLNVLNKHSFK 49
>UniRef50_A4S554 Cluster: Ribosomal protein L28, component of
cytosolic 80S ribosome and 60S large subunit; n=1;
Ostreococcus lucimarinus CCE9901|Rep: Ribosomal protein
L28, component of cytosolic 80S ribosome and 60S large
subunit - Ostreococcus lucimarinus CCE9901
Length = 121
Score = 36.3 bits (80), Expect = 0.47
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 72 WMIIRNNNAFL-VKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
W + + +NAF + FS EP NVT S+R +GL + K + + E+ KG
Sbjct: 13 WQVTKKHNAFTRASTSGHGARFSAEPGNVTAEVSFRASGLANAKTIDIREHDGGKG 68
>UniRef50_UPI00006CFBC8 Cluster: hypothetical protein
TTHERM_00487140; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00487140 - Tetrahymena
thermophila SB210
Length = 294
Score = 35.5 bits (78), Expect = 0.83
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +3
Query: 60 SHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNS 170
S L W I++NNNAFLVK + F+ +P +VT N+
Sbjct: 2 SQLVWEIVKNNNAFLVKNNGV--AFTTDPFSVTGRNT 36
>UniRef50_UPI00006CB6E0 Cluster: Zinc finger, ZZ type family
protein; n=1; Tetrahymena thermophila SB210|Rep: Zinc
finger, ZZ type family protein - Tetrahymena thermophila
SB210
Length = 692
Score = 35.1 bits (77), Expect = 1.1
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 186 LIHKKAVGVVENPDRKGFTIVYKKAKATNKPVXEHYPSSIQSWSEEVSFQSQEIAKGKSL 365
L+ + + VE P ++ I YK + KPV E YP +Q +E+V+ EI GK
Sbjct: 518 LVFENKIQQVEVPKKQECPIFYKPKEVEEKPVSESYPPILQKKAEQVA----EIMGGKFQ 573
Query: 366 PY 371
Y
Sbjct: 574 DY 575
>UniRef50_Q8IM40 Cluster: Putative uncharacterized protein; n=4;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1515
Score = 34.3 bits (75), Expect = 1.9
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 78 IIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVEN 221
+I+N N F +K A+ KK K +N+++ +Y N I + + V N
Sbjct: 480 LIKNKNVFKIKSADCKKEEKKIDSNISDYMNYEENNKISNRHINNVNN 527
>UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing
protein; n=1; Tetrahymena thermophila SB210|Rep: Cyclin,
N-terminal domain containing protein - Tetrahymena
thermophila SB210
Length = 353
Score = 33.9 bits (74), Expect = 2.5
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 48 YKMSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNN-VTN-LNSYRYNGLIHKKAVGVVE 218
+K S+LNW + N + K NIK K+ NN +TN L + +N I+K+ + ++E
Sbjct: 35 WKKKSYLNWQGCKKINNKQINKQNIKATQIKKKNNQLTNSLLGFSFNQSINKQIIQLLE 93
>UniRef50_A7HRP5 Cluster: Glutamine synthetase catalytic region;
n=1; Parvibaculum lavamentivorans DS-1|Rep: Glutamine
synthetase catalytic region - Parvibaculum
lavamentivorans DS-1
Length = 461
Score = 32.7 bits (71), Expect = 5.8
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = -3
Query: 218 LNDTDGFL-----MDQAIVSIRVEVSHIVGFFAERLFDVRLLHEESVIVADNHPIKMRRH 54
+ + DGF+ +D+A + V S FA +++ L HE V+ A +H I +R
Sbjct: 187 ITELDGFMGLLKEIDEAAAAQGVPASGATAEFAPGQYEINLKHENDVVRAGDHAIMLRHL 246
Query: 53 FVVLIRK 33
+ RK
Sbjct: 247 IGAIARK 253
>UniRef50_A2QXB7 Cluster: Similarity to hypothetical protein encoded
by An02g12600 - Aspergillus niger; n=1; Aspergillus
niger|Rep: Similarity to hypothetical protein encoded by
An02g12600 - Aspergillus niger - Aspergillus niger
Length = 265
Score = 32.7 bits (71), Expect = 5.8
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = -1
Query: 373 LYGNDLPLAISWL*KETSSLQL*MDDG*CSFTG---LLVALAFL*TIVKP 233
+YGN L L SW + +++++ MD+ C+ G LLV+L+F+ +I+ P
Sbjct: 35 VYGNSLMLVNSWTERGGATMEMRMDNICCAMHGISLLLVSLSFVSSILAP 84
>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
Ymf77 - Tetrahymena pigmentosa
Length = 1260
Score = 32.3 bits (70), Expect = 7.7
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 66 LNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDR 230
L W+ + NNN FL K N+K + N+ N + + N I +GV++ D+
Sbjct: 161 LFWIKLNNNNIFLKKNNNLKNLKNLNLKNLKNSINNK-NNFIKINEIGVIDKKDK 214
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,041,366
Number of Sequences: 1657284
Number of extensions: 7981778
Number of successful extensions: 20580
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 19922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20557
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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