Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N16
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    59   5e-10
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.2  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   7.4  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   7.4  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   9.8  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   9.8  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 58.8 bits (136), Expect = 5e-10
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
 Frame = +3

Query: 54  MSSHLNWMIIRNNNAFLVKKANIKK-PFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDR 230
           +S+ L W +IR+NN FLVK+       F++EP NV+  N+ R++GL + KAVGV  N  R
Sbjct: 3   VSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPR 62

Query: 231 KGFTIVYKKAKATNKPVXEHYPSSIQSWSEEVSFQSQEIAKGKSLPYRPD 380
               I     K   KP        I + S   +++S     G++  YR D
Sbjct: 63  GVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRT-GYRDD 111



 Score = 33.1 bits (72), Expect = 0.028
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +1

Query: 364 YRTDLTKATLRRASAILRSQRP 429
           YR DL K ++ RASAIL SQRP
Sbjct: 108 YRDDLVKVSVARASAILSSQRP 129


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 301 PFKAGARRFLFKAKRLLKANHYRTDLT 381
           P   GA  FL     LLK  +Y TDL+
Sbjct: 81  PIPKGAPNFLADVLNLLKKKYYATDLS 107


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 376 GLYGNDLPLAISWL*KETSSLQL*MDDG*CSFTGLL 269
           GL+   LP+  S   K+TS L+  ++D  C F GL+
Sbjct: 507 GLHCGLLPVGQSVYVKKTSGLEWNIEDRICQFGGLV 542


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 19/83 (22%), Positives = 30/83 (36%)
 Frame = +3

Query: 81  IRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKA 260
           IR+ N    K   I    S +PN   +   Y     I        ENP      + Y   
Sbjct: 246 IRSPNTINQKHPYISSTISYQPNVHQDAKYYPLCKDIFPSLAN--ENPHSDNPNLKYSSK 303

Query: 261 KATNKPVXEHYPSSIQSWSEEVS 329
             + +    HYP ++++ S+  S
Sbjct: 304 TLSKRDTSSHYPETLKASSKHSS 326


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 324 PPRSSFEWTTDNVXLQVYWLPWPSYKL 244
           PP SS E T DN   ++   P P+Y +
Sbjct: 101 PPTSSAETTADNSDTEMKLNPIPAYSV 127


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 69  NWMIIRNNNAFLVKKANI 122
           NWM  R  N  L++KAN+
Sbjct: 289 NWMSKRRRNESLIQKANV 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,206
Number of Sequences: 5004
Number of extensions: 34677
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)