Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N16
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     60   2e-09
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     58   4e-09
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     58   6e-09
08_02_0784 + 21183223-21183654,21183892-21184065,21184158-211842...    28   5.7  
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    27   7.5  
02_02_0578 + 11745811-11746013,11749902-11750241,11750325-117505...    27   7.5  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
 Frame = +3

Query: 66  LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
           L W +++ NN+FLVK+    N K  FSKEPNN+ N++SY+++GL +KK V V     ++ 
Sbjct: 8   LVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTVQPASGKET 67

Query: 237 FTIV-YKKAKATNKPVXEHYPS 299
             ++   K +  NKP   ++ S
Sbjct: 68  AVVLSTTKTEKQNKPASLYHKS 89



 Score = 31.9 bits (69), Expect = 0.35
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 286 NIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAILRS 420
           +++R+ F+  A+      K  +  N+YR DLTK  L R SA+ RS
Sbjct: 89  SVMRKEFRKMAKA----VKNQVSDNYYRPDLTKPALARLSAVYRS 129


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
 Frame = +3

Query: 66  LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
           L W I++ NN FLVK+   +N K  F+KEPNN+ N++SY+++GL +KK V +  +  +  
Sbjct: 8   LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67

Query: 237 FTIV-YKKAKATNKPVXEHYPS 299
             ++   K K  N P   ++ S
Sbjct: 68  AVVLSTTKTKKQNAPAKLYHKS 89



 Score = 30.7 bits (66), Expect = 0.81
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 286 NIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAILRS 420
           +++R+ F+  A+      K  +  N+YR DLTK  L R S++ RS
Sbjct: 89  SVMRKEFRKMAKA----VKNQVSDNYYRPDLTKPALARLSSVYRS 129


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
 Frame = +3

Query: 66  LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
           L W I++ NN FLVK+   +N K  F+KEPNN+ N++SY+++GL +KK V +  +  +  
Sbjct: 8   LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDA 67

Query: 237 FTIV-YKKAKATNKPVXEHYPS 299
             ++   K K  N P   ++ S
Sbjct: 68  AVVLSTTKTKKQNAPAKLYHKS 89



 Score = 30.7 bits (66), Expect = 0.81
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 286 NIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAILRS 420
           +++R+ F+  A+      K  +  N+YR DLTK  L R S++ RS
Sbjct: 89  SVMRKEFRKMAKA----VKNQVSDNYYRPDLTKPALARLSSVYRS 129


>08_02_0784 +
           21183223-21183654,21183892-21184065,21184158-21184265,
           21184403-21184457,21184682-21184876,21185291-21185388,
           21186133-21186329,21186408-21186678
          Length = 509

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +3

Query: 96  AFLVKKANIKKPFSKEPNNVTNLNSYRYNGLI 191
           AF+V+KA+ +  +S   ++V  LNSY Y+GL+
Sbjct: 438 AFIVQKASNQTEYSD--SSVPYLNSYYYSGLV 467


>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
            2233053-2233513,2233593-2233717,2233801-2234098,
            2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 87   NNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
            N  A +  K   KKP  ++P         +Y GL+ KK+     N +  G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523


>02_02_0578 +
           11745811-11746013,11749902-11750241,11750325-11750543,
           11751043-11751102,11751262-11751417,11751518-11751611,
           11751914-11751927
          Length = 361

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 179 VSIRVEVSHIVGFFAERLFDVRLLHEESVIV 87
           V +++++S++ GF  +  F  RL  EESVIV
Sbjct: 325 VMVKLDLSYLDGFHDDMDFCCRLAKEESVIV 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,697,634
Number of Sequences: 37544
Number of extensions: 211854
Number of successful extensions: 415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)