Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N16
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)        37   0.013
SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)                     29   3.3  
SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06)                   27   7.7  
SB_41410| Best HMM Match : 7tm_1 (HMM E-Value=0.00049)                 27   7.7  

>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
          Length = 90

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +1

Query: 316 ARRFLFKAKRLLKANHYRTDLTKATLRRASAILRSQRP 429
           +RR L   + +   N+YR DL    +RRA AILRSQ+P
Sbjct: 39  SRRTLKTIEGVCDKNYYRMDLKDPAMRRACAILRSQKP 76


>SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)
          Length = 244

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +1

Query: 304 FKAGARRFLFKAKRLLKANHYR-TDLTKATLRRASAI 411
           F A  +RF F A    K  HYR  DL KA   R   I
Sbjct: 204 FCASGKRFAFSANEARKIEHYRDLDLRKARFSRTRII 240


>SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06)
          Length = 841

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +3

Query: 144 PNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVXEHYPSSIQ-SWS- 317
           P N    +  R  G  H + + V+ N    G +++  KAK TN     H P+S++  +S 
Sbjct: 691 PGNYRARSVPRDPGERHARELCVISNKKTPGSSLLTPKAKETNAK-FHHCPTSLEFKYSM 749

Query: 318 --EEVSFQSQEIAKGK 359
              +V   S+E AK K
Sbjct: 750 PKNKVKDVSRETAKAK 765


>SB_41410| Best HMM Match : 7tm_1 (HMM E-Value=0.00049)
          Length = 780

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -3

Query: 320 LAPALNGRRIMFXYRFIGCLGLLINYREALSVRILNDTD----GFLMDQAIVSIRVEVSH 153
           LAP  N R   F Y  I CL  + ++  AL +  +  T+     ++  Q +         
Sbjct: 392 LAPWRNARLRTFSYSLITCLA-IGDFVSALGLPFILITEHLSSNWIFGQFLCQCLNPTQV 450

Query: 152 IVGFFAERLFDVRLLH 105
           +  F A +LF+++L H
Sbjct: 451 VCAFIARKLFEIQLPH 466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,926,722
Number of Sequences: 59808
Number of extensions: 263620
Number of successful extensions: 583
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)