Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N16
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    52   3e-07
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    32   0.32 
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    28   3.9  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    28   3.9  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    27   6.8  
U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin pr...    27   9.0  
U41108-1|AAQ23120.1|  308|Caenorhabditis elegans Tropomodulin pr...    27   9.0  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 29/70 (41%), Positives = 40/70 (57%)
 Frame = +3

Query: 54  MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 233
           MS  L W +IRNN+AFL  +  I K FS E  N+  +NS +Y+GL +K A+ V  +   K
Sbjct: 1   MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58

Query: 234 GFTIVYKKAK 263
           G  +  K  K
Sbjct: 59  GVVVSTKNEK 68


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = -3

Query: 287 FXYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIVGFFAERLFDVRLL 108
           +  + +GC  LL++Y  +  V I N TDG  M    V+I + +SH++    E     RL+
Sbjct: 94  YTAKSMGC-DLLVHYGHSCLVPIQN-TDGIAMLYVFVNIHINLSHLIDCVKENFQGKRLV 151


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 219 NPDRKGFTIVYKKAKATNK-PVXEHYPSSIQSWSEEVSFQSQEIAKGKSL 365
           N   + FT+   ++ A N+ P  + + S +QS    + F SQEI + +S+
Sbjct: 634 NQQVRAFTLSLLRSYANNESPCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 219 NPDRKGFTIVYKKAKATNK-PVXEHYPSSIQSWSEEVSFQSQEIAKGKSL 365
           N   + FT+   ++ A N+ P  + + S +QS    + F SQEI + +S+
Sbjct: 634 NQQVRAFTLSLLRSYANNESPCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 231 KGFTIVYKKAKATNK-PVXEHYPSSIQSWSEEVSFQSQEIAKGKSL 365
           + FT+   ++ A N+ P  + + S +QS    + F SQEI + +S+
Sbjct: 638 RAFTLSLLRSYANNESPCEQTFSSRVQSLLNNIPFSSQEIDRFESV 683


>U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin
           protein 2, isoform b protein.
          Length = 639

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 194 MDQAIVSIRVEVSHIVGFFAERLFDVRLLHE 102
           M+QAI  + +E +++ G F  +LF   L++E
Sbjct: 154 MNQAIKKVNLETNYLSGDFFSKLFKAALVNE 184


>U41108-1|AAQ23120.1|  308|Caenorhabditis elegans Tropomodulin
           protein 2, isoform a protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 194 MDQAIVSIRVEVSHIVGFFAERLFDVRLLHE 102
           M+QAI  + +E +++ G F  +LF   L++E
Sbjct: 154 MNQAIKKVNLETNYLSGDFFSKLFKAALVNE 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,967,270
Number of Sequences: 27780
Number of extensions: 193944
Number of successful extensions: 496
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)