Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N16
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   4.8  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.3  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 84  RNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKK 200
           R N+  L+KK N   PF K P  +T    +  N +  K+
Sbjct: 8   RINSCDLLKKRNENDPFLKRP--ITGDEKWVVNNIKRKR 44


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 499 LNPKKQKKKLEGGPG 543
           +N K+QK+K+E  PG
Sbjct: 675 INIKRQKEKIEWDPG 689


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 361 DLPLAISWL 335
           DLPL+ISWL
Sbjct: 638 DLPLSISWL 646


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 30  SFSN*NYKMSSHLNWMIIRNNN 95
           S SN NYK S++ N+    NNN
Sbjct: 317 SLSN-NYKYSNYNNYNNYNNNN 337


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 435 LDRPLRPKNS*GATQSSFSQVCTVMI 358
           LD  ++PK+  G+   S   +CTV++
Sbjct: 25  LDCSIKPKDHNGSIYWSMYHLCTVVL 50


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 295 RRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAILRSQ 423
           +RP  A +   L + KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 48  SFNSKNYNNTIHN 10
           ++N+ NYNN  +N
Sbjct: 328 NYNNNNYNNNYNN 340


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 48  SFNSKNYNNTIHN 10
           ++N+ NYNN  +N
Sbjct: 337 NYNNNNYNNNYNN 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,939
Number of Sequences: 438
Number of extensions: 2334
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)