Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N16
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            65   3e-11
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    64   4e-11
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    31   0.68 
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    29   2.7  
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote...    29   2.7  
At1g48100.1 68414.m05368 glycoside hydrolase family 28 protein /...    27   8.3  

>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = +3

Query: 66  LNWMIIRNNNAFLVK---KANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
           L W I++NNN FLVK   + N K  FSKE NN+TN++SY+++GL +KK V +      + 
Sbjct: 8   LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67

Query: 237 FTIVYKKAKATNKP 278
             +   K K  NKP
Sbjct: 68  VVLATTKTKKQNKP 81



 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 358 NHYRTDLTKATLRRASAILRSQR 426
           N+YR DL KA L R SAI +  R
Sbjct: 108 NYYRPDLKKAALARLSAISKGLR 130


>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
 Frame = +3

Query: 66  LNWMIIRNNNAFLVK---KANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 236
           L W I++ NN FLVK   + N K  FSKE NN+ N+NSY+++GL +KK V +      +G
Sbjct: 8   LIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQG 67

Query: 237 FTIVYKKAKATNKPVXEHYPSSIQSWSEEVSFQSQEIA-KGKSLPYRPD 380
             +   K K  NKP      S ++   +E S  S+ +A +     YRPD
Sbjct: 68  VVLGTTKTKRQNKPKLSVNKSILK---KEFSRMSKVVANQVVDNYYRPD 113



 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 358 NHYRTDLTKATLRRASAILRSQR 426
           N+YR DL KA L R SAI +  R
Sbjct: 108 NYYRPDLKKAALARLSAISKGLR 130


>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
            Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 23/85 (27%), Positives = 39/85 (45%)
 Frame = +3

Query: 108  KKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVXE 287
            K+++ ++   KEP+  T     R N    KKA  V E   RK      KK +   KP  +
Sbjct: 770  KQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKKERKRKKP--K 827

Query: 288  HYPSSIQSWSEEVSFQSQEIAKGKS 362
            H    + + +E+   + ++  +GKS
Sbjct: 828  HDEEEVPNETEKPEKKKKKKREGKS 852


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 263 LGLLINYREALSVRILN-DTDGFLMDQAI-VSIRVEVSHIVG 144
           + +LI YRE +S+  LN    GFL++  + + + V+V  +VG
Sbjct: 341 MNILIGYREMISLTKLNAKKGGFLVNNKVKIVVEVDVLQVVG 382


>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
           contains Pfam domain PF03194: LUC7 N_terminus
          Length = 402

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 63  HLNWMIIRNN-NAFLVKKANIKKPFSKEPNN 152
           HL +M++R+     L +KANI+K  SKE N+
Sbjct: 295 HLGYMLVRDKLTELLDEKANIRKERSKERNS 325


>At1g48100.1 68414.m05368 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
           [Glycine max]; contains PF00295: Glycosyl hydrolases
           family 28 (polygalacturonases)
          Length = 475

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 287 FXYRFIGCLGLLINYREALSVRILNDTDG 201
           F  +F GC G+LIN  +  S ++  +TDG
Sbjct: 234 FHMKFDGCQGVLINEIQISSPKLSPNTDG 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,342,125
Number of Sequences: 28952
Number of extensions: 180643
Number of successful extensions: 458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)