Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N15
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   1.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   1.9  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   3.3  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   5.7  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   7.5  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 316 RRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTP 447
           RR++  + P  P  PS     N     KPI GN+   Q+P+ +P
Sbjct: 178 RRSSAGTDPFSPVSPSNP---NFLTPLKPIDGNQEWQQSPLESP 218


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 343  NEPPRPSGDATANTTAAPKPIAGNENLIQ 429
            N PP P+  A  NTT A  P+      I+
Sbjct: 1024 NRPPAPAMQARPNTTQAAAPVTSTTTTIK 1052


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 331 ASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNA 459
           A++P  P  P   A A TT    P+A     +  P   P P A
Sbjct: 363 AAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAA 405


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 316 RRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNA 459
           R A  ++ P   P PSG   A  +  P PI+        P+ TPT  A
Sbjct: 634 RPATPSNPPRSLPPPSGQVNAPMSQTPNPISFAYQ-HGTPLATPTMRA 680


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 236 SKSSNVNPHKTSMQWCGLLPEGASAAGDARISRAGRTSRQGPQAMLQQTPRPP 394
           ++SS+ NP + S        +  S A D R+S +      GP+ +LQ+  R P
Sbjct: 584 TRSSSNNPIEASRPPFSRDEQDISKANDFRVSASSAVYTVGPE-LLQRKKRDP 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,301
Number of Sequences: 5004
Number of extensions: 32073
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)