Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N15
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1382 - 26170563-26170631,26171151-26171843 30 0.80
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 30 0.80
03_06_0094 + 31610866-31611288 29 1.4
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 28 4.3
04_03_1035 - 21887562-21890030 27 5.6
03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648 27 5.6
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 27 5.6
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216... 27 7.4
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 27 7.4
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 27 7.4
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 27 7.4
01_05_0629 + 23809899-23810720 27 7.4
08_01_0148 + 1172975-1173340 27 9.8
07_01_0437 - 3322132-3322251,3322345-3322569,3322953-3323120,332... 27 9.8
05_01_0501 - 4184932-4185048,4185360-4185456,4185537-4185709,418... 27 9.8
03_05_0173 + 21502765-21504216 27 9.8
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 30.3 bits (65), Expect = 0.80
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 322 ANLASWPNEPPRPSGDATANTTAAPKPI 405
A L P PP+PSGDA N P P+
Sbjct: 180 AQLGPPPPPPPQPSGDANENPPPPPPPL 207
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 316 RRANLASWPNEPPRPSGDATANTTAAPK 399
R LA P EP P+ A A T AAPK
Sbjct: 177 REERLAQGPREPAAPAAAAPAQTAAAPK 204
>03_06_0094 + 31610866-31611288
Length = 140
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 301 SVRGGRRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLI 426
S GGRR A P P P D TA AAPKP + +
Sbjct: 78 SPAGGRRRRGAVAPLVFPLPEEDDTAVAAAAPKPAVARKRRV 119
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 305 SAAGDARISRAGRTSRQGPQAMLQQTPRPPR 397
+ AG + SR R R+GP A T PPR
Sbjct: 41 NGAGQTQASRTARKRRKGPVADPSSTELPPR 71
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 242 SSNVNPHKTSMQWCGLLPEGASAAGDARISRAGRTSR 352
+S+ NP K + CGL+P AA RIS A ++R
Sbjct: 38 NSSSNPSKQHLA-CGLVPAAGGAAAGYRISCASVSNR 73
>03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648
Length = 587
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 262 VW-INVT*FGALVTQKTAVHLSKLKTDRNPNLIIETAILSFTIF 134
VW + + A+V Q T V LS L++DR+ + SFT+F
Sbjct: 351 VWSTGIIYYVAVVQQSTYVVLSALQSDRHLGRSFQIPAASFTVF 394
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 310 GGRRANLA-SWPNE-PPRPSGDATANTTAAPKP 402
GGRRA A S+ N PPRPS ++ + +P+P
Sbjct: 136 GGRRACEAFSFKNRAPPRPSSSQASSPSLSPQP 168
>12_02_0364 -
18020249-18020737,18021075-18021502,18021563-18021649,
18022059-18022192,18023051-18023053,18023129-18023187,
18023429-18023887
Length = 552
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 349 PPRPSGDATANTTAAPKPIAG 411
PP P G +T + TA P P AG
Sbjct: 23 PPTPRGMSTPDGTATPPPAAG 43
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 305 SAAGDARISRAGRTSRQGPQAMLQQTPRPPRNR 403
SAA A + G+ RQGP+ + +Q P PP R
Sbjct: 415 SAAAAAAGEQEGKV-RQGPRGVQEQVPCPPPRR 446
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 340 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 453
P+ PP P DA A AAP P + NP +P P
Sbjct: 72 PSPPPPPPLDADAAAEAAPSPALTSPP--PNPSSSPLP 107
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 349 PPRPSGDATANTTAAPKPIAGNE 417
PPRP G A+ T A P P + E
Sbjct: 292 PPRPQGTASNTTAAMPSPPSAPE 314
>01_05_0629 + 23809899-23810720
Length = 273
Score = 27.1 bits (57), Expect = 7.4
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Frame = +2
Query: 302 ASAAG--DARISRAGRTSRQGPQAMLQ------QTPRPPRNRSQETRI*FRIRFG 442
AS+AG DA R GR SR P + L Q+P PR+R TR + R G
Sbjct: 198 ASSAGRFDAMRCREGRGSRSPPSSNLHPAAAQHQSPATPRHRLSATRRAAKRRLG 252
>08_01_0148 + 1172975-1173340
Length = 121
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 292 T*RSVRGGRRANLASWPNEPPRPSGDATANTTAAPKPIAGN 414
T R +R RA S+P P + +A++ AP P + N
Sbjct: 17 TPRLLRANTRATFVSFPRRSPPTTSLLSASSALAPAPPSAN 57
>07_01_0437 -
3322132-3322251,3322345-3322569,3322953-3323120,
3323207-3323322,3323394-3323546,3323655-3323798,
3324475-3325255
Length = 568
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 307 RGGRRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPN 456
R G RA + P PPR S ++ ++ AP+ + + + + + TPN
Sbjct: 28 RPGGRAEPSQPPGYPPRESSHSSVTSSTAPERV----TIADSDLSSSTPN 73
>05_01_0501 -
4184932-4185048,4185360-4185456,4185537-4185709,
4186225-4186305,4186959-4187072,4187177-4187497
Length = 300
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 313 GRRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNP 435
GRRA A P+ PR A A ++++P P A + + +P
Sbjct: 21 GRRARTARLPSPGPRRVVLAAAASSSSPSPDANSSSNSNSP 61
>03_05_0173 + 21502765-21504216
Length = 483
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 340 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 453
P PP P G A + P N+ L+ N PTP
Sbjct: 272 PLSPPPPCGMAKPPNSGDPLTDQNNQQLMANTHSAPTP 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,969,255
Number of Sequences: 37544
Number of extensions: 238804
Number of successful extensions: 1034
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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