Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N15
(464 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079) 33 0.15
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.36
SB_20181| Best HMM Match : RhoGEF (HMM E-Value=0.038) 29 1.4
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34) 29 1.4
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019) 29 2.5
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 27 5.8
SB_48017| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05) 27 7.7
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 27 7.7
SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 27 7.7
>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
Length = 689
Score = 32.7 bits (71), Expect = 0.15
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 304 VRGGRRANLASWPNEPPRPSGDATANTTAAPKPIAGN-ENLIQNPIRTPTPN 456
V+ N S P++PP PS D T TT P P G NP TP+PN
Sbjct: 611 VQAAEAENNRSNPSQPP-PSQDQTTTTTGNPSPPQGQPATTTGNP--TPSPN 659
>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 31.5 bits (68), Expect = 0.36
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 334 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNAR 462
S P + SG +T N + A AGN + + P R P P+AR
Sbjct: 332 SSPASGAQTSGSSTRNASTAVTASAGNNSPLAPPSRPPPPSAR 374
>SB_20181| Best HMM Match : RhoGEF (HMM E-Value=0.038)
Length = 274
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +2
Query: 242 SSNVNPHKTSMQWCGLLPE--GASAAGDARISRAGRTSRQGPQAMLQQTPRPPRNRS 406
S+N P K + W LPE G S R+ R G QA+ P PPRN +
Sbjct: 192 STNHAPEKVA--WMETLPELLGQSGVSPTLSDRSPWEVRHGGQAVGTDKPSPPRNEA 246
>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
Length = 674
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 340 PNEPPRPSGDATANTTAAPKP 402
P EPPRPS ATA+ P+P
Sbjct: 261 PAEPPRPSPAATAHPVMPPRP 281
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 325 NLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNA 459
N +S P+ P P+ + ++ +P PI+ N ++ +PI P P++
Sbjct: 502 NPSSNPSSDPSPNPSSNPSSEPSPNPIS-NPSISTSPISNPHPSS 545
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 340 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPN 456
PN P PS D + N ++ P + N NP P+PN
Sbjct: 489 PNPSPNPSSDPSPNPSSNPSS-DPSPNPSSNPSSEPSPN 526
>SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)
Length = 653
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -1
Query: 425 IRFSFPAIXXXXXXXXXXASPEGLGGSFGQLARFARRPP 309
I + FPAI P +G S G L R+ RPP
Sbjct: 443 INYVFPAINIAVLSLLVFLIPPEVGKSMGPLVRYPYRPP 481
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 310 GGRRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPI-RTPTPNA 459
GGR SWP +P + + P P A E+ +P RT NA
Sbjct: 88 GGRYPLRVSWPANKNKPQPSGFSQEQSRPSPFASQEHNQTSPFARTMDDNA 138
>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 277 LHRG-FVWINVT*FGALVTQKTAVHLSKLKTDRNPNLIIETAILSF 143
+H G V++++ FG ++T +A+HL+ + DR +I+ A F
Sbjct: 548 IHSGHIVYVSMCLFGTVLTIVSAIHLNGWRLDRRLGVILFIAYAFF 593
>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 972
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 284 GLLPEGASAAGDARISRAGRTSRQGPQAMLQQTPRPPRNRSQ 409
G+ GASA+G + + P ++QQ RPP N+ Q
Sbjct: 492 GVAVSGASASGQMMMQSPYMGTSPQPVYVMQQQARPPFNQPQ 533
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +2
Query: 212 SRFLCYQCSKSSNVNPHKTSMQWCGLLPEGASAA--GDARISRAGRTSRQGPQAMLQQTP 385
+R LCY S N + TS + PEG S + G++ TS +G +
Sbjct: 56 TRQLCYSKGNSGNTEGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPEGNSTCPEGNS 115
Query: 386 RPPRNRS 406
P S
Sbjct: 116 TSPEGNS 122
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 298 RSVRGGRRANLASWPNEPPRPSGDATANTTAAPKPIAG 411
+ VRGGRR N S N+ P G+ + KP G
Sbjct: 403 KKVRGGRRKNSPSLMNDDDPPYGEPISPKLKGVKPERG 440
>SB_48017| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05)
Length = 249
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 278 WCGLLPEGASAAGDARISRAGRTSRQGPQAMLQQTPRPPRNRSQETRI 421
WC L + A D+RIS GRT P + +P + ++ET++
Sbjct: 200 WCRLSRGSSVGALDSRISTRGRT----PLLAVASATQPNADHAEETQV 243
>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
Length = 889
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 259 TQNLDAMVRFVT*RSVRGGRRANLASWPNEPPRPSGDATANTTAAPKP 402
T + D R + +++ P PP+ S D T T+ APKP
Sbjct: 87 TVDSDLRARAIAMEALKAANAQAKEPVPYPPPQSSTDFTFKTSGAPKP 134
>SB_6281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 296 EGAS-AAGDARISRAGRTSRQGPQAMLQQTPRPPRNRSQETR 418
+GA +A AR+ + + P+ Q TPRPP +R Q +
Sbjct: 85 DGADVSARRARMMQRQNATTVDPEERQQYTPRPPSSRPQSAK 126
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 278 WCGLLPEGASAAGDARISRAGRTSRQGPQAMLQQTPRPPRNRSQETRI 421
WC L + A D+RIS GRT P + +P + ++ET++
Sbjct: 364 WCRLSRGSSVGALDSRISTRGRT----PLLAVASATQPNADHAEETQV 407
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,613
Number of Sequences: 59808
Number of extensions: 265789
Number of successful extensions: 1000
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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