Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N15
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z92797-2|CAB07236.1|  425|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AL132851-3|CAB60415.1|  251|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    27   5.0  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    27   5.0  
AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine re...    27   6.6  
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 340 PNEPPRPSGDATANTTAAPKPIA 408
           P  PP P+  ATA    APKP+A
Sbjct: 847 PAPPPPPATQATAAPVTAPKPVA 869


>Z92797-2|CAB07236.1|  425|Caenorhabditis elegans Hypothetical
           protein H25P06.4 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 94  NYLNITCHPVDASRREQYGAFNQNTELHS 8
           +Y +++  P+D + R+  GAF++N EL S
Sbjct: 32  SYKSLSAKPIDVAFRKLTGAFSKNYELRS 60


>AL132851-3|CAB60415.1|  251|Caenorhabditis elegans Hypothetical
           protein Y53H1B.6 protein.
          Length = 251

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 94  NYLNITCHPVDASRREQYGAFNQNTELHS 8
           +Y +++  P+D + R+  GAF++N EL S
Sbjct: 32  SYKSLSAKPIDVAFRKLTGAFSKNYELRS 60


>Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical
           protein B0393.6 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 212 SRFLCYQCSKSSNVNPHKTSMQWCGLLPEGASAAGDARISRAGRTSRQGPQAMLQQTPRP 391
           SR++CY  SKS NV+     ++    LP    A      SR+  T       ++  T  P
Sbjct: 248 SRYICYDASKSDNVSMDSVFVESPHSLPTNV-APRIPPSSRSSFTQHSNDSGVVLST--P 304

Query: 392 PRNRSQET 415
           P + S +T
Sbjct: 305 PTSSSAKT 312


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 334 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 453
           S+P+  P  SG ++ +T AAP P    E+    P R P P
Sbjct: 538 SFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPP 577


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 334 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 453
           S+P+  P  SG ++ +T AAP P    E+    P R P P
Sbjct: 364 SFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPP 403


>AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein15 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 155 HFVLYNFLLAQLIDNLYSCSKLFKYHLSSRRRVASGTIWCV 33
           +F+L NF   QL  + Y C     YH+    +    TI+C+
Sbjct: 22  YFILNNF---QLNQDWYVCPNNVSYHIGVEHKFWGATIFCM 59


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 340 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNA 459
           P   P P   A A  T AP P+     ++  P   PTP A
Sbjct: 119 PQVAPAPETPAPAPETPAPAPVQETPQVVA-PAPEPTPEA 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,973,407
Number of Sequences: 27780
Number of extensions: 196573
Number of successful extensions: 708
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)