Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N15
         (464 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    31   0.51 
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica...    29   2.0  
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica...    29   2.0  
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica...    29   2.0  
At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein con...    28   2.7  
At5g19620.1 68418.m02335 outer membrane OMP85 family protein wea...    27   4.7  
At3g51650.1 68416.m05664 expressed protein                             27   4.7  
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te...    27   4.7  
At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family p...    27   6.2  
At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR ...    27   6.2  
At1g09960.1 68414.m01122 sucrose transporter / sucrose-proton sy...    27   6.2  
At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovin...    27   8.3  
At3g42190.1 68416.m04340 hypothetical protein                          27   8.3  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    27   8.3  
At1g49270.1 68414.m05524 protein kinase family protein contains ...    27   8.3  

>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 340 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNA 459
           P +P  P   AT+    AP P +     I  P++ PTP++
Sbjct: 819 PPKPVTPLPPATSPMANAPTPSSSESGEISTPVQAPTPDS 858


>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1150

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 347 SRQGPQAMLQQTPRPPRNRSQETRI*FRIRFGLRHRMQ 460
           ++Q  QA + Q P+PP   SQ+ ++   +   L H+ Q
Sbjct: 482 NKQNQQAPMSQLPQPPTTLSQQQQLQQLLHSSLNHQQQ 519


>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1164

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 347 SRQGPQAMLQQTPRPPRNRSQETRI*FRIRFGLRHRMQ 460
           ++Q  QA + Q P+PP   SQ+ ++   +   L H+ Q
Sbjct: 481 NKQNQQAPMSQLPQPPTTLSQQQQLQQLLHSSLNHQQQ 518


>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1165

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 347 SRQGPQAMLQQTPRPPRNRSQETRI*FRIRFGLRHRMQ 460
           ++Q  QA + Q P+PP   SQ+ ++   +   L H+ Q
Sbjct: 482 NKQNQQAPMSQLPQPPTTLSQQQQLQQLLHSSLNHQQQ 519


>At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase (GI:3820531) [Pinus
           contorta]; similar to beta-glucosidase GI:804655 from
           (Hordeum vulgare)
          Length = 520

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 209 YSRFL-CYQCSKSSNVNPHKTSMQWCGLLPEG 301
           Y+RFL   Q      VN ++ S+ WC +LP G
Sbjct: 91  YNRFLEDIQLMSFLGVNSYRFSISWCRILPRG 122


>At5g19620.1 68418.m02335 outer membrane OMP85 family protein weak
           similarity to chloroplastic outer envelope membrane
           protein (OEP75) [Pisum sativum] GI:633607; contains Pfam
           profile PF01103: outer membrane protein, OMP85 family
          Length = 732

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 122 LIDNLYSCSKLFKYHLSSRR 63
           L+ NL SCSK F  HLS+ R
Sbjct: 28  LLTNLQSCSKTFVSHLSNTR 47


>At3g51650.1 68416.m05664 expressed protein
          Length = 826

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 340 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNAR 462
           P+  PR S        + P P++ N N I  P   P PN +
Sbjct: 483 PSREPRKSWHQLF-ARSTPAPVSSNVNTISRPSTNPQPNVQ 522


>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
           tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
           similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
           sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
           profile: PF00085 Thioredoxin
          Length = 380

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 343 NEPPRPSGDATANTTAAPKPIAGNE 417
           NEPP+P GD TA  T   +  A +E
Sbjct: 91  NEPPQPMGDPTAEVTDENRDDAQSE 115


>At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857
          Length = 278

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 340 PNEPPRPSGDATANTTAAPKPIAGNENL 423
           P  PP P+ D     + AP P A NE +
Sbjct: 217 PKTPPAPATDTPEADSPAPAPSADNEKI 244


>At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 893

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 444 SPNRILNQILVSCDRFRGGRGVCCSIA 364
           SP+R L  + VS D+ R    +CCSI+
Sbjct: 704 SPDRQLESLSVSTDKLREFEIMCCSIS 730


>At1g09960.1 68414.m01122 sucrose transporter / sucrose-proton
           symporter (SUT4) nearly identical to sucrose transporter
           SUT4 [Arabidopsis thaliana] GI:9957053
          Length = 510

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = -2

Query: 268 GFVW------INVT*FGALVTQKTAVHLSKLKTDRNPNLIIETAILSFTI 137
           GFVW      + +   G ++T   A HL  +  ++ P  I+  A+L FTI
Sbjct: 367 GFVWGISNILMAICFLGMIITSFVASHLGYIGHEQPPASIVFAAVLIFTI 416


>At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovine,
           PIR2:I46014
          Length = 452

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 310 GGRRANLASWPNEPPRPSGDATA----NTTAAPKPIAGN 414
           G RR    +   EP R SG + A    N  AA KPI+GN
Sbjct: 141 GERRGGGFNRDREPSRDSGPSRADEDDNWAAAKKPISGN 179


>At3g42190.1 68416.m04340 hypothetical protein
          Length = 695

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +1

Query: 256 STQNLDAMVRFVT*RSVRGGRRANLASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNP 435
           S +NLD ++++ T  ++ G +R +L +     P   G         P+ +AGNE+  +  
Sbjct: 499 SAENLDNVIKYGT-ITILGAQRNSLKTVAAALPSDGG-----VVLPPRAVAGNEDSPREG 552

Query: 436 IRTP 447
           + TP
Sbjct: 553 VETP 556


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 331 ASWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNAR 462
           +S  ++ P PS ++  + + AP PI         P+  PTPN++
Sbjct: 731 SSETSQVPTPSSESNQSPSQAPTPIL-------EPVHAPTPNSK 767


>At1g49270.1 68414.m05524 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 699

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 334 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQN 432
           +W + PP P         + P P++G  N+IQ+
Sbjct: 260 NWVSSPPPPPPGNWQPMPSPPAPVSGGANVIQS 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,378,957
Number of Sequences: 28952
Number of extensions: 180834
Number of successful extensions: 549
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)