Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N13
(354 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 50 1e-07
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 37 0.001
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 34 0.007
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 32 0.030
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 31 0.052
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 30 0.091
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 29 0.21
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 29 0.21
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 28 0.37
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 27 0.85
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 0.85
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 1.5
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 26 2.0
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 2.0
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 2.0
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 25 3.4
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 25 4.5
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 24 6.0
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 24 6.0
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 24 7.9
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 24 7.9
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 24 7.9
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 24 7.9
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 24 7.9
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 50.0 bits (114), Expect = 1e-07
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Frame = +2
Query: 74 TLANNTIGLHSLRINDESEVKCLKQ-------ITQPGHQKDPRCVAISSDNLAILSASAD 232
+L NN+I +++L + E L + I PGH+ D R +A+S+++ ILS +
Sbjct: 358 SLQNNSIEVYALDVKSEGSAAPLTERASRISAIEIPGHRADVRTLALSANHDVILSGANG 417
Query: 233 SIKLWNRANQTCLRSI 280
S+KLWN+ +C+R+I
Sbjct: 418 SLKLWNKKTTSCIRTI 433
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 36.7 bits (81), Expect = 0.001
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 143 KQITQ-PGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRS 277
K+IT GH + R + IS D IL+AS+D+ IKLW+ Q CL S
Sbjct: 207 KRITDLVGHTDNVRDILISDDGRTILTASSDATIKLWSLRAQKCLFS 253
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 33.9 bits (74), Expect = 0.007
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 143 KQITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRS 277
K+IT GH V I D +LS S DS IK+W+ TCL +
Sbjct: 384 KRITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHT 429
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 31.9 bits (69), Expect = 0.030
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +2
Query: 26 STTLLVGTTGE-LRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSD 202
S+ LL G+ + +++ A ++GL +++ E C + T GH VA+S D
Sbjct: 496 SSILLSGSLDKTIKVWELQATRSVGLSAIK----PEGIC--KATYTGHTDFVLSVAVSPD 549
Query: 203 NLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPS--SVCFAPGDRHALCGCG 352
+ LS S D S++ W+ QT + G + S SVCF+P R G G
Sbjct: 550 SRWGLSGSKDRSMQFWDL--QTGQSYLTCQGHKNSVISVCFSPDGRQFASGSG 600
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.1 bits (67), Expect = 0.052
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 98 LHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLWN 250
+H N ES + T GH+K CV++S + I ++S+D +IK+W+
Sbjct: 31 IHKRIRNYESHSGFSEYCTLFGHEKSVTCVSVSPNKRWIATSSSDGTIKIWS 82
Score = 28.7 bits (61), Expect = 0.28
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 131 VKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIP 283
V+CLK GH + + ++S S D ++++WN + TCLR +P
Sbjct: 131 VRCLK-----GHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRMLP 177
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 30.3 bits (65), Expect = 0.091
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCL 271
GH+ + C+ +S +LS S D S+++W+ + +CL
Sbjct: 99 GHEHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCL 136
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 29.1 bits (62), Expect = 0.21
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 164 HQKDPRCVAISSDNLAILSASADS-IKLWN 250
HQK C+A++S+N +LS D +K++N
Sbjct: 249 HQKSITCLAMNSENTRLLSGGLDGHVKIYN 278
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 29.1 bits (62), Expect = 0.21
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 104 SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADSIKLW 247
++R+ D + K L +T H+K R +++ D S S+D+IK W
Sbjct: 312 TIRLWDLAAGKTLTTLTH--HKKTVRALSLHPDEFTFASGSSDNIKHW 357
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 28.3 bits (60), Expect = 0.37
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 158 PGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTC 268
PGH++ + +S + LSAS D +I+LW+ + C
Sbjct: 109 PGHKQTVTSIDVSPADETFLSASLDNTIRLWDLRSPNC 146
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.1 bits (57), Expect = 0.85
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGS 295
GH R + +LS S D ++++WN ++ +R+IPV S
Sbjct: 187 GHSSVIRGLTFEPTGSFLLSGSRDKTVQVWNIKKRSAVRTIPVFHS 232
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.1 bits (57), Expect = 0.85
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = +2
Query: 32 TLLVGTTGELRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLA 211
TL V +TG+ + + ++ +G L +SE LKQ H + SSD
Sbjct: 301 TLTVNSTGDW---IAIGSSKLG-QLLVWEWQSESYVLKQ---QSHYDALSTLQYSSDGQR 353
Query: 212 ILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFA 319
I++ + D IK+W+ + C+ + S S +CF+
Sbjct: 354 IITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFS 390
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 1.5
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +2
Query: 164 HQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLRSIPVV 289
H +A+SSD++ I A +++ W+ C++++ V
Sbjct: 434 HTAPVTALALSSDDVLITGADDKTVRQWDIVTGRCIQTLDFV 475
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 25.8 bits (54), Expect = 2.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 206 LAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHALCGCG 352
L + S +I+ W + C R+I S+ + +C +P D+ L G
Sbjct: 12 LLVSSGYDHTIRFWEALSGICSRTIQHADSQVNRLCISP-DKKFLAAAG 59
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 2.0
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFAPG 325
GHQ V +++ I ++ IK+WN + ++SI S+C PG
Sbjct: 135 GHQSSVWAVLALGEDIFITGSADKLIKIWN--GEKLVKSILAHNDCVRSLCQIPG 187
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 2.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 130 SEMFEADNTARTSEGSTVCC 189
S++F A +++ T+EG VCC
Sbjct: 425 SDLFFAISSSNTNEGDVVCC 444
>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 206
Score = 25.0 bits (52), Expect = 3.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 59 LRIGVTLANNTIGLHSLRINDESEVKCLKQITQ 157
L I T N IGL +R+N E+ +K++ Q
Sbjct: 39 LTIYQTNKNAMIGLDGVRLNTHPEIPSIKRVLQ 71
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 4.5
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFA 319
GHQ D CV+ + + + S+D + ++W+ +R S S++C +
Sbjct: 485 GHQNDVDCVSFHPNAAYLATGSSDHTTRMWDVRTGGTVRVFNAHHSPVSALCMS 538
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 257 NQTCLRSIPVVGSRPSSVCFAPGDRHALCGC 349
N T S+P + + + F+P +ALC C
Sbjct: 102 NVTSAASMPAILNAAGQLEFSPSTNNALCCC 132
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWN 250
GH D CV ++ +L+ S+D + +LW+
Sbjct: 461 GHLSDVDCVTFHPNSAYVLTGSSDKTCRLWD 491
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 39 WSVPPESYVLVSL*LITLSACIV*GS 116
W +P ++++V + L+ LS C G+
Sbjct: 147 WPIPAHTHIVVRVLLLLLSICFFVGA 172
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 23.8 bits (49), Expect = 7.9
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 104 SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSI 280
S+ + D+ K LK + + + + + S S D + LW+ N+T + S
Sbjct: 203 SIHLLDQETGKILKSYIGLKNMEYRVRSSFNQSETIVFSGSEDGKVYLWDLENETQITST 262
Query: 281 PVVGS 295
VVG+
Sbjct: 263 SVVGT 267
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 152 TQPGHQKDPRCVA 190
T PGH K+P+C A
Sbjct: 482 TVPGHHKNPKCRA 494
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 39 WSVPPESYVLVSL*LITLSACIV*GS 116
W +P ++++V + L+ LS C G+
Sbjct: 147 WPIPAHTHIVVRVLLLLLSICFFVGA 172
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADS 235
GHQ+ C+AI+ D +++ S D+
Sbjct: 366 GHQEPILCMAITPDGKRVVTGSDDT 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,939
Number of Sequences: 5004
Number of extensions: 29425
Number of successful extensions: 113
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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