Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N13
(354 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36541| Best HMM Match : WD40 (HMM E-Value=0) 38 0.002
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.009
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.009
SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.009
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.022
SB_42943| Best HMM Match : WD40 (HMM E-Value=0) 34 0.038
SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05) 33 0.050
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 32 0.12
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21) 31 0.20
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36) 31 0.27
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07) 31 0.27
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 30 0.47
SB_17121| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.47
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 30 0.62
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.62
SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23) 29 0.82
SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15) 29 0.82
SB_38494| Best HMM Match : Phage_integrase (HMM E-Value=1.4) 29 0.82
SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22) 29 1.1
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_46758| Best HMM Match : WD40 (HMM E-Value=5.8e-13) 28 1.9
SB_45648| Best HMM Match : WD40 (HMM E-Value=2.4e-14) 28 1.9
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9) 28 1.9
SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 27 4.4
SB_7988| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_50716| Best HMM Match : WD40 (HMM E-Value=0) 27 5.8
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 27 5.8
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 27 5.8
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49) 27 5.8
SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074) 27 5.8
SB_33245| Best HMM Match : Sterile (HMM E-Value=4.5) 26 7.7
SB_32323| Best HMM Match : WD40 (HMM E-Value=0) 26 7.7
SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26) 26 7.7
SB_37163| Best HMM Match : PQQ (HMM E-Value=0) 26 7.7
>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1070
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFAPGDR 331
GH + CV ++ D+ I+++ DS I +WN N C+ ++ + G S + DR
Sbjct: 212 GHTQRLDCVTVTRDDKFIVTSGGDSLINIWNTENHDCIHTLKIGGKGQSHLVLTNDDR 269
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 164 HQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
H PRCV + + A+ D++K+W+ Q C+ + P S + V +P
Sbjct: 552 HLDQPRCVMVDFGRKGVSGANEDNLKIWDMRTQECIITKPASVSCVTRVATSP 604
Score = 32.3 bits (70), Expect = 0.12
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 101 HSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRS 277
+++++ D ++C Q T GH +A+S D+ I+SAS D +K+W + C ++
Sbjct: 442 NNIKVWDLVRLEC--QATLKGHTSLIWAIAVSRDDSVIVSASKDDLLKVWRTESWVCTQT 499
Query: 278 I 280
+
Sbjct: 500 L 500
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLW 247
GH CVA+++D I+S S D ++K+W
Sbjct: 502 GHSSWISCVAMTTDGKTIISGSNDKNVKMW 531
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 35.9 bits (79), Expect = 0.009
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHA 337
GH R +AI+SD ++SAS D ++++WN + ++ VC +P D+ A
Sbjct: 830 GHDGHVRGIAITSDGRRLVSASQDRTLRIWNLETFAHVSTLRGHSETVYCVCCSPDDKFA 889
Query: 338 LCG 346
+ G
Sbjct: 890 ISG 892
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSI 280
T GH + CV S D+ +S S D+ +K+W+ + +RS+
Sbjct: 869 TLRGHSETVYCVCCSPDDKFAISGSEDTMVKIWDLESAKEVRSL 912
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 35.9 bits (79), Expect = 0.009
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +2
Query: 104 SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
++R+ D L Q+ GH CV +S D I S+SAD +I+LWN +++ LRS+
Sbjct: 1204 TIRVWDSKTGALLAQLD--GHAGAVTCVRVSPDGGVIASSSADKTIRLWNPSDE-FLRSL 1260
Query: 281 PVVGSRPSSVCFA 319
R +S+ F+
Sbjct: 1261 EGHEDRVTSLAFS 1273
>SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 35.9 bits (79), Expect = 0.009
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 164 HQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
H RC S D I+S S D +IKLW+R ++ C+ + G +SV F P
Sbjct: 69 HMNWVRCAKFSPDGRLIVSGSDDKTIKLWDRTSKDCVHTFYDPGGFVNSVEFHP 122
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 34.7 bits (76), Expect = 0.022
Identities = 20/82 (24%), Positives = 41/82 (50%)
Frame = +2
Query: 77 LANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADSIKLWNRA 256
L + G +++I+D + + Q+ GH V + D++ ++ ++++LW+
Sbjct: 1119 LVSGGAGNGNIQISDCTTGNTIGQLK--GHSSHIMSVYAAKDDIIASGSNDNTVRLWDLR 1176
Query: 257 NQTCLRSIPVVGSRPSSVCFAP 322
+Q C+ +I S SSVC P
Sbjct: 1177 SQRCIDAIATGDSCVSSVCVNP 1198
>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
Length = 273
Score = 33.9 bits (74), Expect = 0.038
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWN 250
GH KD VA S+DN I+S + D IKLWN
Sbjct: 140 GHTKDVLSVAFSADNRQIVSGARDHHIKLWN 170
>SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)
Length = 788
Score = 33.5 bits (73), Expect = 0.050
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 194 SSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHALCGC 349
S D ++SAS+D S+ LWN A +RSI G SSV A + + C
Sbjct: 347 SDDGSLVVSASSDNSVNLWNVATGRLVRSIEKAGENISSVLVAKDNTLIVSTC 399
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 32.3 bits (70), Expect = 0.12
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRS-------IPVVGSRPSS 307
T GH D ++++ +N + +S + D S KLW+ TC+++ I V PS
Sbjct: 108 TYSGHTGDVMSLSLNPNNQSFVSGACDASAKLWDIRGGTCVQTFTGHESDINAVAFFPSG 167
Query: 308 VCFAPGDRHALC 343
F G A C
Sbjct: 168 FAFGTGSDDATC 179
>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
Length = 759
Score = 31.5 bits (68), Expect = 0.20
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 143 KQITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFA 319
+ T GH K R V+ ++D LSA D +KLW+ CL P V F
Sbjct: 125 RTFTSYGHSKAVRDVSFNNDGTQFLSAGYDRYVKLWDTETGECLGRY-TNKKIPYCVKFN 183
Query: 320 PG-DRHALCGCG 352
P D+ L CG
Sbjct: 184 PDEDKQHLFVCG 195
>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
Length = 885
Score = 31.1 bits (67), Expect = 0.27
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAIL-SASADS-IKLWNRANQTCLRSI 280
GH C++ +L++L S S D +KLWN + CLR+I
Sbjct: 64 GHTDGVNCLSRHPRSLSVLLSGSCDGEVKLWNLPTKDCLRTI 105
>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
Length = 1213
Score = 31.1 bits (67), Expect = 0.27
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 203 NLAILSASADSIKLWN-RANQTCLRSIPVVGSRPSSVCFAPGDRHALCGCG 352
+L + +A D IKLW+ R N C R I GS SVC A HA C G
Sbjct: 163 DLFLTAAVTDGIKLWDLRTNNPCARYI-ATGSEDRSVC-ASHQYHA-CVAG 210
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 30.3 bits (65), Expect = 0.47
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 149 ITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFAPG 325
+ Q GH D +A S D I + D +KLWN C + + ++V F+P
Sbjct: 1245 LKQQGHYYDMNVLAYSPDGNYIATGGDDGKVKLWNTMTGFCFVTFHEHSASVTAVTFSPN 1304
Query: 326 DRHAL 340
+ L
Sbjct: 1305 GQVVL 1309
>SB_17121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 30.3 bits (65), Expect = 0.47
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 149 ITQPGHQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLRSI 280
+T H+K R V ++ + SAS D+IK+W + L+++
Sbjct: 439 VTLTNHKKSIRAVTLNPNLFTFASASPDNIKMWKFPDGNFLQNL 482
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 29.9 bits (64), Expect = 0.62
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHA 337
GH C A S D+ I+S SAD ++K+W+ ++ + S F+P D A
Sbjct: 550 GHGDVVNCCAFSHDDSRIISCSADQTVKIWDASSGEGVLCFVGHTQEVFSCSFSPDDTKA 609
Query: 338 L 340
+
Sbjct: 610 V 610
>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 644
Score = 29.9 bits (64), Expect = 0.62
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +2
Query: 59 LRIGVTLANNTI----GLHSLRINDESEVKCLKQITQPG-HQKDPRCVAISSDNLAILSA 223
L G+ L NNT+ +++I D + +CL+ + P HQ C+ SS I S+
Sbjct: 521 LTSGMELRNNTLVSGNADSTVKIWDITTGQCLQTLAGPNKHQSAVTCLQFSS-KFVITSS 579
Query: 224 SADSIKLWNRANQTCLRSI 280
++K+W+ +R +
Sbjct: 580 DDGTVKIWDLQTGEFIRDL 598
>SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)
Length = 437
Score = 29.5 bits (63), Expect = 0.82
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
GH+ + ISSD+ I++ SAD +IK+W C +SI
Sbjct: 244 GHKLPVMAMDISSDSTLIVTGSADKNIKIWGLDFGDCHKSI 284
>SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15)
Length = 291
Score = 29.5 bits (63), Expect = 0.82
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 146 QITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
++T+P Q D + ++++S D +K+W+ Q C ++ S S A
Sbjct: 106 RVTRP--QGDDHSAEFFKEKSVLVTSSKDMLVKMWDLDTQHCFLTLVGHSSEVWSFTLAR 163
Query: 323 GDRHALCGCG 352
+R + GCG
Sbjct: 164 NERRLVTGCG 173
>SB_38494| Best HMM Match : Phage_integrase (HMM E-Value=1.4)
Length = 192
Score = 29.5 bits (63), Expect = 0.82
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 104 SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADSIKLWNRA 256
SL + ++++ LK +TQP +A + + LAIL AS +S ++ +A
Sbjct: 8 SLLVEGAADIESLKCLTQPATGGKQTEIADAREKLAILEASGNSREMVGKA 58
>SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)
Length = 195
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 134 KCLKQITQPGHQKDPRCVAISSDNLAILSASADS---IKLWN 250
+C+++ T GH D +C+ ++S S DS IKLW+
Sbjct: 144 RCMEEKTLRGHGADVKCIDWHPHKSLLVSGSKDSQQPIKLWD 185
>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 HQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
H V++ + I+SAS D SIK+W+ ++ C+R++
Sbjct: 86 HDNVVSSVSVDCEKSRIISASWDRSIKVWDLTSEQCIRTL 125
>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
++R+ D +C+ + GH+ C+ D +LS SAD +IKLWN + CL ++
Sbjct: 623 TIRVWDMRTWECV--LVLQGHEGAVSCLEF--DAPFVLSGSADKTIKLWNVESGDCLNTL 678
>SB_46758| Best HMM Match : WD40 (HMM E-Value=5.8e-13)
Length = 125
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 104 SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADSIKLWNRANQTC 268
++RI D + C+ I G ++S D I A+ + + LWN AN TC
Sbjct: 42 TVRIWDVASGACVG-IVYAGLSNASAITSVSYDQDYIAVAAGNLVSLWNLANGTC 95
>SB_45648| Best HMM Match : WD40 (HMM E-Value=2.4e-14)
Length = 316
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 212 ILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHALCG 346
I+SAS DS +KLWN CLR+ + + V A + CG
Sbjct: 160 IVSASTDSQLKLWNINKPHCLRTFKGHINEKNFVGLASNGDYVACG 205
>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
Length = 870
Score = 28.3 bits (60), Expect = 1.9
Identities = 25/79 (31%), Positives = 33/79 (41%)
Frame = +2
Query: 104 SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLRSIP 283
SLR E V + +PG K +S LA L + KL +R + C +
Sbjct: 253 SLREVSEKSVDKSSEHREPGAIKGGWFQRLSHPMLANLKRKVNE-KL-HRESDDCAHNND 310
Query: 284 VVGSRPSSVCFAPGDRHAL 340
V+ SRPS P D H L
Sbjct: 311 VISSRPSHEGVEPRDPHVL 329
>SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADSIKLWNRAN 259
GH++D VA+ NL S+ I +WNR +
Sbjct: 217 GHKEDILSVAVCPPNLLATSSYDGEIIIWNRVS 249
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 182 CVAISSDNLAILSASADS-IKLWNRANQTCLRSI 280
C+A S ++S D +++WN N C+R++
Sbjct: 109 CMAFDSTERRLISGGRDGRLRIWNYNNGHCIRTL 142
>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
Length = 685
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLW 247
GH C+A+S D + SA+AD +++LW
Sbjct: 626 GHTSRVLCMAMSPDGQYVASAAADETLRLW 655
>SB_7988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLW 247
GH C+A+S D + SA+AD +++LW
Sbjct: 9 GHTSRVLCMAMSPDGQYVASAAADETLRLW 38
>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
Length = 494
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLR 274
T GH++ C+ D L + +S ++I+LW+ CLR
Sbjct: 348 TLNGHRRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLR 387
>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
Length = 1080
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 122 ESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADSIKLWNRANQTC 268
E+ +C + T+ H PRCV S ++ A S+ + L + + TC
Sbjct: 389 EASPRCERDSTE--HDDSPRCVRDSKEHEADTSSPLPYLSLREKLSTTC 435
Score = 26.2 bits (55), Expect = 7.7
Identities = 26/101 (25%), Positives = 40/101 (39%)
Frame = +2
Query: 8 AARGLKSTTLLVGTTGELRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCV 187
A R STT + +T R T + ES K T+ H+ PRCV
Sbjct: 234 ARRARDSTTKPLTSTRRARDSTTKPLTSTRRTRASKKHESAPKSSPNSTE--HEASPRCV 291
Query: 188 AISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSV 310
S +++ + DS + + A+ C+R + PS V
Sbjct: 292 RDSMEHVVVPRCVRDSTE--HEASPRCVRDSMEQEAGPSRV 330
>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 830
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 24 NQLRCWSVPPESYVLVSL 77
N L+CWS+P YV V+L
Sbjct: 205 NDLQCWSMPHYIYVAVAL 222
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRP 301
GH ++ V + + + S + I++W+R++ CLR + +G P
Sbjct: 2878 GHPQNVEHVICTLSGIVSICLSGE-IRVWDRSSGDCLRVVNRMGRNP 2923
>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
Length = 714
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 125 SEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADSIKLWNRA 256
++++ LK +TQP +A + + LAIL AS +S ++ +A
Sbjct: 15 ADIESLKCLTQPATGGKQTEIADAREKLAILEASGNSREMVGKA 58
>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
Length = 1087
Score = 26.6 bits (56), Expect = 5.8
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 188 AISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHALCGCG 352
A +S LA S D + +WN +Q L SI VV +++ F P + LC G
Sbjct: 344 AHNSTVLAAFSGLPDFQLTVWNWTDQVPLCSISVVHQTCTNMSFNPLNWRQLCTIG 399
>SB_33245| Best HMM Match : Sterile (HMM E-Value=4.5)
Length = 244
Score = 26.2 bits (55), Expect = 7.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 4 RGGTRIKINYVVGRYHRRVTY 66
+GGT + ++Y+V R H+ + Y
Sbjct: 118 KGGTAVDLHYMVARTHQSIQY 138
>SB_32323| Best HMM Match : WD40 (HMM E-Value=0)
Length = 611
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 101 HSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCL 271
+ +++ + + +CL T GH R + ILS+S D +I++WN ++TC+
Sbjct: 73 YKIKVWNYKQKRCL--FTLLGHLDYIRTTFFHHEYPWILSSSDDQTIRIWNWQSRTCI 128
>SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)
Length = 490
Score = 26.2 bits (55), Expect = 7.7
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 164 HQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHAL 340
HQ CV + D++ I S S DS +KL N L S+ P +P ++
Sbjct: 247 HQGPLTCVDCNKDDVLIASGSEDSTVKLINSNTGKVLTSLNAGFPNPKDDTDSPPSIESV 306
Query: 341 C 343
C
Sbjct: 307 C 307
>SB_37163| Best HMM Match : PQQ (HMM E-Value=0)
Length = 419
Score = 26.2 bits (55), Expect = 7.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 182 CVAISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRH 334
C A S + LS+ S+ LW A+ + + PV+ + +V F DRH
Sbjct: 204 CAADDSARILTLSSKDGSV-LWKFADAGKIFANPVLSADKKTVYFCSLDRH 253
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,473,404
Number of Sequences: 59808
Number of extensions: 243569
Number of successful extensions: 750
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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