Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N13
(354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical pr... 36 0.008
Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical pr... 35 0.014
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 35 0.019
U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily ass... 33 0.057
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 33 0.076
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 32 0.10
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 32 0.10
Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 32 0.13
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 32 0.13
AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeri... 32 0.13
AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein. 32 0.13
Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical pr... 31 0.18
Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical pr... 31 0.23
Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical pr... 31 0.23
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 29 0.71
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 29 0.71
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 29 0.71
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 27 2.8
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 27 2.8
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 27 2.8
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 3.8
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 3.8
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 5.0
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 27 5.0
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 27 5.0
AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp (s... 27 5.0
AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical ... 27 5.0
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 26 6.6
U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 26 6.6
U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 26 6.6
Z77134-7|CAJ90503.1| 121|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z77134-6|CAB00872.2| 135|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z75953-4|CAJ85747.1| 294|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z75953-3|CAB00100.1| 611|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z47070-2|CAA87343.2| 340|Caenorhabditis elegans Hypothetical pr... 26 8.7
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 26 8.7
AL032653-3|CAA21713.1| 861|Caenorhabditis elegans Hypothetical ... 26 8.7
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 26 8.7
AF166171-1|AAD49860.1| 611|Caenorhabditis elegans adducin-head-... 26 8.7
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 152 TQPGHQKDPRCVAI--SSDNLAILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
T GH+K CV + I+S + D +K+W+ N+TC++++ SSVCF P
Sbjct: 180 TLEGHEKGVNCVDYYHGGEKPYIISGADDHLVKIWDYQNKTCVQTLDGHAQNVSSVCFHP 239
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 37.5 bits (83), Expect = 0.003
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +2
Query: 104 SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSI 280
S+RI D C+K T P H V+ + D I S S D +++W+ AN C++++
Sbjct: 194 SVRIWDVKTGMCIK--TLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTL 251
Query: 281 PVVGSRP-SSVCFAPGDRHAL 340
+ P + V F+P ++ L
Sbjct: 252 VDDENPPVAFVKFSPNGKYIL 272
Score = 29.5 bits (63), Expect = 0.71
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCF 316
T GH C + + ++S S D S+++W+ C++++P S+V F
Sbjct: 166 TLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSF 221
>Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical
protein ZC302.2a protein.
Length = 501
Score = 35.9 bits (79), Expect = 0.008
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +2
Query: 104 SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSI 280
++R+ D C+K I P H ++ + D + ++S D I++W+ A+ +CL+++
Sbjct: 320 TVRVWDFKTGLCVKCI--PAHSDPITSISYNHDGNTMATSSYDGCIRVWDAASGSCLKTL 377
Query: 281 PVVGSRP-SSVCFAPGDRHAL 340
P + VCF+P ++ L
Sbjct: 378 VDTDHAPVTFVCFSPNGKYLL 398
>Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical
protein K04D7.1 protein.
Length = 325
Score = 35.1 bits (77), Expect = 0.014
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 164 HQKDPRCVAISSDNLAILSASAD-SIKLWNRANQ 262
H KD VA S+DN I+S S D SIKLWN Q
Sbjct: 110 HTKDVLSVAFSADNRQIVSGSRDKSIKLWNTLAQ 143
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 34.7 bits (76), Expect = 0.019
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 107 LRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIP 283
+++ D S +C+K T GH C + I S S D +I++W N + SIP
Sbjct: 172 VKVFDVSSGRCVK--TLKGHTNYVFCCCFNPSGTLIASGSFDETIRIWCARNGNTIFSIP 229
Query: 284 VVGSRPSSVCF 316
SSVCF
Sbjct: 230 GHEDPVSSVCF 240
>U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily
assigned gene nameprotein 345 protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.057
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWN 250
GH++ CV+++SD+ +S S D ++K+WN
Sbjct: 209 GHERAVECVSVNSDSTRAISGSVDTNLKIWN 239
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 32.7 bits (71), Expect = 0.076
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSIPV 286
T GH K V + DN+ +SASADS I++W+ + + I V
Sbjct: 246 TFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDV 291
Score = 29.5 bits (63), Expect = 0.71
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 143 KQITQPGHQKDPRCVAISSDNLAILSASADSI-KLWNRANQTCLRSIPVVGSRPSSVCFA 319
K +PG Q + D L + +AD++ K+W+ NQT + P + S+ F+
Sbjct: 330 KVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFS 389
Query: 320 PGDRHALCG 346
+ G
Sbjct: 390 ENGYYLATG 398
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 32.3 bits (70), Expect = 0.10
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSI 280
T GH CV + A+ S SAD IK+W+ NQ C RS+
Sbjct: 373 TLSGHSDQVTCVKFYQSHSAV-SGSADRVIKIWDIQNQRCSRSL 415
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 32.3 bits (70), Expect = 0.10
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHA 337
GH CV I+ + ++ S D S+K+W C +S +SV F PG+
Sbjct: 584 GHSLPVTCVDIAPSSKLCVTGSVDKSVKVWGLDFGDCHKSFHAHDDAVTSVLFCPGEEQL 643
Query: 338 LCGCG 352
G
Sbjct: 644 FWSAG 648
Score = 31.9 bits (69), Expect = 0.13
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +2
Query: 77 LANNTIGLHSLRINDESE-VKC--LKQITQPGHQKDPRCVAISSDNLAILSASADSIKLW 247
L +NT+ + I S V+C + + + GH++D R + +SS + + S + + +W
Sbjct: 376 LTDNTVHWVKMSIETTSNSVECDSVGNLDKLGHREDVRALCVSSSSSLLASGGGNEVIVW 435
Query: 248 NRANQTCLRSIPVVGSRP-SSVCFAPGDRHALCG 346
+ + ++ + +V F PGD + L G
Sbjct: 436 STHSLRSSLTLTDNDIKDIVAVNFVPGDNYILTG 469
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADS-IKLWN 250
GH+K C+ SSD L + D I LW+
Sbjct: 101 GHKKAVNCIEFSSDGLLFATGGKDGVIVLWD 131
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSI 280
GH++ + + I+S S DS IK W+ A+Q+C ++
Sbjct: 143 GHKESVTQMKFVRGDRFIISTSKDSLIKFWSIASQSCFYTV 183
>Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical
protein F55B12.3b protein.
Length = 585
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T GH RCV D ++S D ++K+WN C+R++ +R S+ F +
Sbjct: 371 TLHGHHAAVRCVQF--DGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLF-ESE 427
Query: 329 RHALC 343
R +C
Sbjct: 428 RSIVC 432
>Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical
protein F55B12.3a protein.
Length = 587
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T GH RCV D ++S D ++K+WN C+R++ +R S+ F +
Sbjct: 373 TLHGHHAAVRCVQF--DGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLF-ESE 429
Query: 329 RHALC 343
R +C
Sbjct: 430 RSIVC 434
>Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical
protein F52A8.2 protein.
Length = 356
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 95 GLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLW 247
G R+ +KC + GH+ C+ S D A+ SAS D +I++W
Sbjct: 304 GYGDYRVGVWDSLKCARHSVLYGHENRISCLRTSPDGTAVCSASWDCTIRIW 355
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 31.9 bits (69), Expect = 0.13
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRAN-QTCLRSI--PVVGSRPSSVCF 316
T GH VA S N ++SAS+DS ++LW N + +R+I P G P+SV F
Sbjct: 461 TLTGHTDAIWSVAYHSSNSRLVSASSDSTVRLWEPGNGEPLIRTIGAPKSGILPTSVDF 519
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 HQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
H + +AI + L +LS S D SI++WN ++CL+ I
Sbjct: 599 HVEGVSSLAIDPNGLYLLSGSHDGSIRMWNMEKRSCLQEI 638
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 31.9 bits (69), Expect = 0.13
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRAN-QTCLRSI--PVVGSRPSSVCF 316
T GH VA S N ++SAS+DS ++LW N + +R+I P G P+SV F
Sbjct: 461 TLTGHTDAIWSVAYHSSNSRLVSASSDSTVRLWEPGNGEPLIRTIGAPKSGILPTSVDF 519
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 HQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
H + +AI + L +LS S D SI++WN ++CL+ I
Sbjct: 599 HVEGVSSLAIDPNGLYLLSGSHDGSIRMWNMEKRSCLQEI 638
>AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeric G
protein beta subunit2 protein.
Length = 356
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 95 GLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLW 247
G R+ +KC + GH+ C+ S D A+ SAS D +I++W
Sbjct: 304 GYGDYRVGVWDSLKCARHSVLYGHENRISCLRTSPDGTAVCSASWDCTIRIW 355
>AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein.
Length = 587
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T GH RCV D ++S D ++K+WN C+R++ +R S+ F +
Sbjct: 373 TLHGHHAAVRCVQF--DGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLF-ESE 429
Query: 329 RHALC 343
R +C
Sbjct: 430 RSIVC 434
>Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical
protein Y53C12B.1 protein.
Length = 793
Score = 31.5 bits (68), Expect = 0.18
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T GH++ V + ++ + S S D +IK+WN + ++CL++I V FA D
Sbjct: 518 TLSGHRRGVGDVKFAKNSHKLASCSGDMTIKIWNISEKSCLQTISGHSCAVFRVIFARND 577
>Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical
protein F35G12.4b protein.
Length = 680
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCL 271
GH + R + ++ D LSA +D +I+LW+ Q C+
Sbjct: 218 GHTDNVRALVVNDDGTRALSAGSDATIRLWDIGQQRCI 255
>Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical
protein F35G12.4a protein.
Length = 683
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCL 271
GH + R + ++ D LSA +D +I+LW+ Q C+
Sbjct: 218 GHTDNVRALVVNDDGTRALSAGSDATIRLWDIGQQRCI 255
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 194 SSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSR 298
S D I SASAD +IK+WN A ++IP VG+R
Sbjct: 248 SPDGTKIASASADKTIKIWNVATLKVEKTIP-VGTR 282
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 194 SSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSR 298
S D I SASAD +IK+WN A ++IP VG+R
Sbjct: 248 SPDGTKIASASADKTIKIWNVATLKVEKTIP-VGTR 282
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 194 SSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSR 298
S D I SASAD +IK+WN A ++IP VG+R
Sbjct: 248 SPDGTKIASASADKTIKIWNVATLKVEKTIP-VGTR 282
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 27.5 bits (58), Expect = 2.8
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -2
Query: 290 PPPEYSGDMFDLPYSIV 240
PPP+++G +FD P S++
Sbjct: 72 PPPQFTGSLFDTPPSMI 88
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 27.5 bits (58), Expect = 2.8
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -2
Query: 290 PPPEYSGDMFDLPYSIV 240
PPP+++G +FD P S++
Sbjct: 72 PPPQFTGSLFDTPPSMI 88
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 27.5 bits (58), Expect = 2.8
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -2
Query: 290 PPPEYSGDMFDLPYSIV 240
PPP+++G +FD P S++
Sbjct: 72 PPPQFTGSLFDTPPSMI 88
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 27.5 bits (58), Expect = 2.8
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -2
Query: 290 PPPEYSGDMFDLPYSIV 240
PPP+++G +FD P S++
Sbjct: 72 PPPQFTGSLFDTPPSMI 88
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWN 250
GHQ+ R +A S+ + +SAS+D ++KLW+
Sbjct: 1106 GHQEKIRKLAAISNENSFVSASSDKTVKLWS 1136
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWN 250
GHQ+ R +A S+ + +SAS+D ++KLW+
Sbjct: 1106 GHQEKIRKLAAISNENSFVSASSDKTVKLWS 1136
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 26.6 bits (56), Expect = 5.0
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +2
Query: 116 NDESEVKCLKQITQ-PGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVV 289
+D + + C K GH D V+ S N ILS+ D ++KLW+ + CL +
Sbjct: 699 DDNNGLFCAKPFALLKGHTADILDVSWSK-NYFILSSGMDRTVKLWHLSRNECLCCFQHI 757
Query: 290 GSRPSSVCFAP-GDRHALCG 346
+ V F P DR+ L G
Sbjct: 758 -DFVTCVAFLPKDDRYFLSG 776
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 26.6 bits (56), Expect = 5.0
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +2
Query: 116 NDESEVKCLKQITQ-PGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVV 289
+D + + C K GH D V+ S N ILS+ D ++KLW+ + CL +
Sbjct: 699 DDNNGLFCAKPFALLKGHTADILDVSWSK-NYFILSSGMDRTVKLWHLSRNECLCCFQHI 757
Query: 290 GSRPSSVCFAP-GDRHALCG 346
+ V F P DR+ L G
Sbjct: 758 -DFVTCVAFLPKDDRYFLSG 776
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLRSI 280
T GH+K CV + + + SI +W+ Q C+ ++
Sbjct: 272 TLEGHEKGVNCVEFLTGGRIVSGSDDCSICVWDIQTQKCIETL 314
>AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 17 protein.
Length = 567
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASADS-IKLWN 250
T GH+ R VA +++ LSAS D +KLW+
Sbjct: 314 TYAGHKLPVREVAFNNEGTEFLSASFDRYVKLWD 347
>AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical
protein Y54G2A.11a protein.
Length = 482
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 248 NRANQTCLRSIPVVGSRPSSVCFAPGDRHALCG 346
N + TC +++P V +P+ V + R +CG
Sbjct: 370 NESKWTCQKNLPAVIYKPTLVSYRKPQRAQICG 402
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 93 IVLLAKVTPIRNSPVVPTN 37
++ LA VTPIR PVVP++
Sbjct: 509 MIQLATVTPIRPRPVVPSD 527
>Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical
protein F15C11.1 protein.
Length = 744
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 156 CVICFKHFTSLSSL 115
C +CFKHF+S S+L
Sbjct: 591 CGVCFKHFSSSSAL 604
>U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form
protein.
Length = 715
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 156 CVICFKHFTSLSSL 115
C +CFKHF+S S+L
Sbjct: 562 CGVCFKHFSSSSAL 575
>U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form
protein.
Length = 744
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 156 CVICFKHFTSLSSL 115
C +CFKHF+S S+L
Sbjct: 591 CGVCFKHFSSSSAL 604
>Z77134-7|CAJ90503.1| 121|Caenorhabditis elegans Hypothetical
protein R09H10.3b protein.
Length = 121
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 156 SPDIRRIHGVLLSVLITWPFYQLQRIPSNY 245
SPD I G V IT P+Y+ + + S Y
Sbjct: 59 SPDFTLIPGTYRLVYITEPYYKAKNVESFY 88
>Z77134-6|CAB00872.2| 135|Caenorhabditis elegans Hypothetical
protein R09H10.3a protein.
Length = 135
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 156 SPDIRRIHGVLLSVLITWPFYQLQRIPSNY 245
SPD I G V IT P+Y+ + + S Y
Sbjct: 73 SPDFTLIPGTYRLVYITEPYYKAKNVESFY 102
>Z75953-4|CAJ85747.1| 294|Caenorhabditis elegans Hypothetical
protein F57F5.4b protein.
Length = 294
Score = 25.8 bits (54), Expect = 8.7
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +2
Query: 53 GELRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD 232
G GV A LHS N EVKC+ H P VA+S+ +L S +
Sbjct: 105 GSTNFGVNQAGYV--LHSAIHNGRPEVKCVV------HLHHPSVVAVSAQKCGLLPISQE 156
Query: 233 SI 238
S+
Sbjct: 157 SM 158
>Z75953-3|CAB00100.1| 611|Caenorhabditis elegans Hypothetical
protein F57F5.4a protein.
Length = 611
Score = 25.8 bits (54), Expect = 8.7
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +2
Query: 53 GELRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD 232
G GV A LHS N EVKC+ H P VA+S+ +L S +
Sbjct: 422 GSTNFGVNQAGYV--LHSAIHNGRPEVKCVV------HLHHPSVVAVSAQKCGLLPISQE 473
Query: 233 SI 238
S+
Sbjct: 474 SM 475
>Z47070-2|CAA87343.2| 340|Caenorhabditis elegans Hypothetical
protein T09B9.3 protein.
Length = 340
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 117 LILKLCKPIVLLAKVTPIRNSPVVPTNNVVDFN 19
L L L PI+L +R SPV +N V FN
Sbjct: 31 LALLLTLPILLSVAFCVLRRSPVQESNKAVFFN 63
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLR 274
T GH++ C+ L + +S ++I+LW+ + CLR
Sbjct: 380 TLAGHRRGIACLQYRG-RLVVSGSSDNTIRLWDIHSGVCLR 419
>AL032653-3|CAA21713.1| 861|Caenorhabditis elegans Hypothetical
protein Y54E5B.2 protein.
Length = 861
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/43 (20%), Positives = 19/43 (44%)
Frame = +2
Query: 98 LHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSAS 226
+H D ++CLK+ P +++ DNL ++ +
Sbjct: 361 IHVYNFADVENIRCLKRFRAQNASMIPAVISVVHDNLLVIGTT 403
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLR 274
T GH++ C+ L + +S ++I+LW+ + CLR
Sbjct: 380 TLAGHRRGIACLQYRG-RLVVSGSSDNTIRLWDIHSGVCLR 419
>AF166171-1|AAD49860.1| 611|Caenorhabditis elegans
adducin-head-domain-related protein protein.
Length = 611
Score = 25.8 bits (54), Expect = 8.7
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +2
Query: 53 GELRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD 232
G GV A LHS N EVKC+ H P VA+S+ +L S +
Sbjct: 422 GSTNFGVNQAGYV--LHSAIHNGRPEVKCVV------HLHHPSVVAVSAQKCGLLPISQE 473
Query: 233 SI 238
S+
Sbjct: 474 SM 475
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,987,753
Number of Sequences: 27780
Number of extensions: 173384
Number of successful extensions: 553
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -