Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N13
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   0.61 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   4.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   4.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   7.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   7.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   9.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 0.61
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 81  AKVTPIRNSPVVPTNNVVDFNPRAAS 4
           A  T + + PVV TN+    NPR AS
Sbjct: 494 AASTAVIHEPVVETNSSPSPNPRIAS 519


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 204 TWPFYQLQRIPSNYGIGQIKHVSGVFRW 287
           +W  Y+L+  P  YG  ++ HV     W
Sbjct: 80  SWYDYKLKWDPKEYGGVEMLHVPSDHIW 107


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 214 NGQVIRTDSNTPWILLMSGLCYLL 143
           N ++IR+   T  I+L   +C+++
Sbjct: 208 NNEIIRSIQGTGTIILKKTVCFVI 231


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 204 TWPFYQLQRIPSNYGIGQIKHVSGVFRW 287
           +W  Y+L+  P  YG  ++ HV     W
Sbjct: 84  SWYDYKLRWEPKEYGGVKMLHVPSDHIW 111


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 204 TWPFYQLQRIPSNYGIGQIKHVSGVFRW 287
           +W  Y+L+  P  YG  ++ HV     W
Sbjct: 84  SWYDYKLRWEPKEYGGVKMLHVPSDHIW 111


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 207 WPFYQLQRIPSNYGIGQIKHVSGVFRW 287
           W  Y+L+  P +YG     HV     W
Sbjct: 77  WNDYKLKWNPDDYGGVDTLHVPSEHIW 103


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = +2

Query: 59  LRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCV 187
           LR    L  +   L SL        + ++ I  P H  +P C+
Sbjct: 295 LRPAAGLLTSRDFLSSLAFRVFQSTQYIRHIKSPYHTPEPDCI 337


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 68  QYVTLRWYRPTT*LILILVPP 6
           +Y+  RW  PTT    +LV P
Sbjct: 438 KYLPERWTTPTTPHSPLLVAP 458


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 291 AVGRAACASP 320
           A+GR+AC SP
Sbjct: 293 ALGRSACHSP 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,040
Number of Sequences: 438
Number of extensions: 2070
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)