Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N13
(354 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 52 1e-07
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 40 6e-04
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 38 0.003
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 38 0.003
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 38 0.003
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 38 0.003
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 38 0.003
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 38 0.003
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 38 0.003
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 36 0.006
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 34 0.031
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 33 0.072
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 33 0.072
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 33 0.072
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 32 0.096
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 32 0.096
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 31 0.17
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 31 0.22
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 30 0.39
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 30 0.39
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 30 0.39
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 30 0.39
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 30 0.39
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 30 0.39
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 30 0.51
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 30 0.51
At5g20330.1 68418.m02419 beta-1,3-glucanase (BG4) identical to t... 29 0.89
At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR... 29 0.89
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 29 0.89
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 29 1.2
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 29 1.2
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 29 1.2
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 29 1.2
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 28 1.6
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 28 1.6
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 28 1.6
At2g38950.1 68415.m04786 transcription factor jumonji (jmj) fami... 28 1.6
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 28 1.6
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 28 2.1
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta... 28 2.1
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 27 2.7
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 27 2.7
At5g16810.1 68418.m01969 expressed protein 27 3.6
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 27 3.6
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 27 4.7
At5g32470.1 68418.m03828 expressed protein 27 4.7
At3g52940.2 68416.m05836 C-14 sterol reductase / delta(14)-stero... 27 4.7
At3g52940.1 68416.m05835 C-14 sterol reductase / delta(14)-stero... 27 4.7
At3g24200.1 68416.m03037 monooxygenase family protein low simila... 27 4.7
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 27 4.7
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 27 4.7
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 27 4.7
At5g20340.1 68418.m02420 beta-1,3-glucanase (BG5) identical to p... 26 6.3
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 26 6.3
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 26 6.3
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 26 6.3
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 26 6.3
At3g15330.1 68416.m01935 NLI interacting factor (NIF) family pro... 26 6.3
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 26 6.3
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 26 6.3
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 26 8.3
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 26 8.3
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 26 8.3
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 26 8.3
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 26 8.3
At3g27150.1 68416.m03396 kelch repeat-containing F-box family pr... 26 8.3
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 26 8.3
At1g33220.1 68414.m04104 beta-1,3-glucanase, putative similar to... 26 8.3
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 52.0 bits (119), Expect = 1e-07
Identities = 22/72 (30%), Positives = 44/72 (61%)
Frame = +2
Query: 65 IGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADSIKL 244
+ ++L NN++ +SL+ ++ ++ ++ GH+ D R V +S DN ++S S +K+
Sbjct: 375 LALSLNNNSLEFYSLKSSENAKTVTIEH---QGHRSDVRSVTLSEDNTLLMSTSHSEVKI 431
Query: 245 WNRANQTCLRSI 280
WN + +CLR+I
Sbjct: 432 WNPSTGSCLRTI 443
Score = 30.7 bits (66), Expect = 0.29
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCF 316
GH+ C+ ISSD I++ S D ++K+W C +SI G V F
Sbjct: 580 GHKLPVMCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKSIFAHGDSVMGVKF 632
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 39.5 bits (88), Expect = 6e-04
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 68 GVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAIL-SASAD-SIK 241
G TLA+ T G H+++I D CLK +T GH++ P V + I+ S S D ++
Sbjct: 118 GRTLAS-THGDHTVKIIDCETGNCLKVLT--GHRRTPWVVRFHPHHSEIVASGSLDLEVR 174
Query: 242 LWNRANQTCLRS 277
LWN C+RS
Sbjct: 175 LWNTTTSECIRS 186
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWN 250
GH KD VA S+DN I+SAS D +IKLWN
Sbjct: 103 GHTKDVLSVAFSTDNRQIVSASRDRTIKLWN 133
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 37.5 bits (83), Expect = 0.003
Identities = 25/105 (23%), Positives = 45/105 (42%)
Frame = +2
Query: 8 AARGLKSTTLLVGTTGELRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCV 187
A +G + TG+ + NT+ + + N+ V K GH + V
Sbjct: 630 AVKGASTQVRFQPRTGQFLAAAS--ENTVSIFDIE-NNNKRVNIFK-----GHSSNVHSV 681
Query: 188 AISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
S + + S S D++KLW+ ++ C+ + G++ SV F P
Sbjct: 682 CWSPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHP 726
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.003
Identities = 25/105 (23%), Positives = 45/105 (42%)
Frame = +2
Query: 8 AARGLKSTTLLVGTTGELRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCV 187
A +G + TG+ + NT+ + + N+ V K GH + V
Sbjct: 632 AVKGASTQVRFQPRTGQFLAAAS--ENTVSIFDIE-NNNKRVNIFK-----GHSSNVHSV 683
Query: 188 AISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
S + + S S D++KLW+ ++ C+ + G++ SV F P
Sbjct: 684 CWSPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHP 728
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.003
Identities = 25/105 (23%), Positives = 45/105 (42%)
Frame = +2
Query: 8 AARGLKSTTLLVGTTGELRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCV 187
A +G + TG+ + NT+ + + N+ V K GH + V
Sbjct: 632 AVKGASTQVRFQPRTGQFLAAAS--ENTVSIFDIE-NNNKRVNIFK-----GHSSNVHSV 683
Query: 188 AISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
S + + S S D++KLW+ ++ C+ + G++ SV F P
Sbjct: 684 CWSPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHP 728
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.003
Identities = 25/105 (23%), Positives = 45/105 (42%)
Frame = +2
Query: 8 AARGLKSTTLLVGTTGELRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCV 187
A +G + TG+ + NT+ + + N+ V K GH + V
Sbjct: 632 AVKGASTQVRFQPRTGQFLAAAS--ENTVSIFDIE-NNNKRVNIFK-----GHSSNVHSV 683
Query: 188 AISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
S + + S S D++KLW+ ++ C+ + G++ SV F P
Sbjct: 684 CWSPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHP 728
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.5 bits (83), Expect = 0.003
Identities = 25/105 (23%), Positives = 45/105 (42%)
Frame = +2
Query: 8 AARGLKSTTLLVGTTGELRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCV 187
A +G + TG+ + NT+ + + N+ V K GH + V
Sbjct: 632 AVKGASTQVRFQPRTGQFLAAAS--ENTVSIFDIE-NNNKRVNIFK-----GHSSNVHSV 683
Query: 188 AISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
S + + S S D++KLW+ ++ C+ + G++ SV F P
Sbjct: 684 CWSPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHP 728
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWN 250
GH KD VA S+DN I+SAS D +IKLWN
Sbjct: 103 GHTKDVLSVAFSTDNRQIVSASRDRTIKLWN 133
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 36.3 bits (80), Expect = 0.006
Identities = 19/31 (61%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWN 250
GH KD VA S DN I+SAS D +IKLWN
Sbjct: 103 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 133
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 33.9 bits (74), Expect = 0.031
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 104 SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
SL+ + EVK + H C++++ + + SAS D +IK+W A+ CL SI
Sbjct: 185 SLKPRNYVEVKKHRTALWIKHADAVSCLSLNDEQGLLYSASWDRTIKVWRIADSKCLESI 244
Query: 281 PVVGSRPSSV 310
P +SV
Sbjct: 245 PAHDDAVNSV 254
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 32.7 bits (71), Expect = 0.072
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 104 SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
++RI + KC++ I H V + D I+SAS D S K+W+ TCL+++
Sbjct: 151 TIRIWEVKTGKCVRMIK--AHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKTL 208
Query: 281 PVVGSRPSSVCFA 319
+ + +V FA
Sbjct: 209 --IDDKSPAVSFA 219
Score = 30.7 bits (66), Expect = 0.29
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 104 SLRIND-ESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRS 277
+LRI D S +CLK + GH CV + + I+S S D +I++W C+R
Sbjct: 108 TLRIWDARSPYECLKVLR--GHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRM 165
Query: 278 IPVVGSRPSSVCF 316
I SSV F
Sbjct: 166 IKAHSMPISSVHF 178
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T GH CV S+D + SAS D ++ LW+ N + + S S + ++ D
Sbjct: 38 TLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHRYEGHSSGISDLAWS-SD 96
Query: 329 RHALC 343
H C
Sbjct: 97 SHYTC 101
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 32.7 bits (71), Expect = 0.072
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 149 ITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFAPG 325
+ Q GH D CV S D+ + + + D+ +K+WN + TC + + +++ F
Sbjct: 343 LKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFM-A 401
Query: 326 DRHAL 340
D H+L
Sbjct: 402 DNHSL 406
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 32.7 bits (71), Expect = 0.072
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 149 ITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFAPG 325
+ Q GH D CV S D+ + + + D+ +K+WN + TC + + +++ F
Sbjct: 383 LKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFM-A 441
Query: 326 DRHAL 340
D H+L
Sbjct: 442 DNHSL 446
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 32.3 bits (70), Expect = 0.096
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 143 KQITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFA 319
K + GH + R + + S LS S+DS I+LW+ Q CL + V ++
Sbjct: 247 KSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACN 306
Query: 320 PGDRHALCG 346
P H G
Sbjct: 307 PSFSHVYSG 315
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 32.3 bits (70), Expect = 0.096
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 143 KQITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSIPVVGSRPSSVCFA 319
K + GH + R + + S LS S+DS I+LW+ Q CL + V ++
Sbjct: 247 KSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACN 306
Query: 320 PGDRHALCG 346
P H G
Sbjct: 307 PSFSHVYSG 315
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 31.5 bits (68), Expect = 0.17
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T GH + CV+ S D + S S D +++LW+ +T L + + +V ++P
Sbjct: 104 TIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDG 163
Query: 329 RHALCG 346
+H + G
Sbjct: 164 KHLVSG 169
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 31.1 bits (67), Expect = 0.22
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNR 253
GH+K C+A++SD +LS SAD S+++W R
Sbjct: 326 GHRKAIMCLAVASD--LVLSGSADKSLRVWRR 355
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 30.3 bits (65), Expect = 0.39
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +2
Query: 158 PGHQKDPRCVAISSDNLAILSASAD--SIKLW--NRANQTCLRSIPVVGSRPSSV 310
PGH CV+ S NL +L++++D +I++W +R NQ + V GS + V
Sbjct: 528 PGHAGAVNCVSWSPTNLHMLASASDDGTIRIWGLDRINQQNQKKKLVQGSSSNGV 582
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 152 TQPGHQKDPRCVAI--SSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
T HQK CV D +++ S D + K+W+ ++C++++ S+VCF P
Sbjct: 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHP 239
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 152 TQPGHQKDPRCVAI--SSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
T HQK CV D +++ S D + K+W+ ++C++++ S+VCF P
Sbjct: 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHP 239
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 152 TQPGHQKDPRCVAI--SSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
T HQK CV D +++ S D + K+W+ ++C++++ S+VCF P
Sbjct: 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHP 239
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 30.3 bits (65), Expect = 0.39
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLR 274
GH D +A S + S+ +++LWN ++QTCL+
Sbjct: 511 GHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLK 548
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 152 TQPGHQKDPRCVAI--SSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
T HQK CV D +++ S D + K+W+ ++C++++ S+VCF P
Sbjct: 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 80 ANNTIGLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRA 256
A+ TI +++ ++ + +++ T GH+ VA SSD I+SAS D ++KLW+
Sbjct: 44 ADKTIRTYTINTINDPIAEPVQEFT--GHENGISDVAFSSDARFIVSASDDKTLKLWDVE 101
Query: 257 NQTCLRSI 280
+ ++++
Sbjct: 102 TGSLIKTL 109
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCF 316
GH CV + + I+S S D ++++W+ CL+ +P ++V F
Sbjct: 111 GHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDF 163
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 29.9 bits (64), Expect = 0.51
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 134 KCLKQITQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCL 271
+CL T GH R V +N I+SAS D +I++WN ++TC+
Sbjct: 84 RCL--FTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCI 128
>At5g20330.1 68418.m02419 beta-1,3-glucanase (BG4) identical to to
plant beta-1,3-glucanase bg4 GI:2808438 from
[Arabidopsis thaliana]
Length = 345
Score = 29.1 bits (62), Expect = 0.89
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 89 TIGLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADSIKLWNRAN 259
+IG+ +RI D + + L + GH+ V + +LA L+AS +++K W AN
Sbjct: 57 SIGISRIRIFDPN-TEVLNALR--GHRDIEVTVGVKDQDLAALAASEEAVKGWFAAN 110
>At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 900
Score = 29.1 bits (62), Expect = 0.89
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 8 AARGLKSTTLLVGTTGELRIGVTLANNTIGLHSLRINDESEVKCLKQITQPGHQK 172
A+ GL T L T I ++ N TI +H+L E+ C + I +PG ++
Sbjct: 456 ASSGLDVTFGLQVLTSRSLIHISRCNRTITMHNLLEQLGREIVCEQSIAEPGKRQ 510
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 29.1 bits (62), Expect = 0.89
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +2
Query: 98 LHSLRINDESEVKCLKQITQPGHQKD----PRCVAISSDNLAILSASAD-SIKLWNRANQ 262
L +R+ D + + C + GH++ CV+ SS N+ I++ S D +++LWN ++
Sbjct: 380 LEEVRVYDVATMSCSYVLA--GHKEVVLSLDTCVS-SSGNVLIVTGSKDKTVRLWNATSK 436
Query: 263 TCL 271
+C+
Sbjct: 437 SCI 439
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADS-IKLW 247
GH+ D +A+SS+N+ I SAS D I++W
Sbjct: 285 GHEGDITDLAVSSNNIFIASASNDCVIRVW 314
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 152 TQPGHQKDP-RCVAISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T+ G+++D C A+S ++ ++SAS I L+N + + +S+ F P D
Sbjct: 839 TREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAFHPQD 898
Query: 329 RHAL 340
+ +
Sbjct: 899 NNII 902
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 152 TQPGHQKDP-RCVAISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T+ G+++D C A+S ++ ++SAS I L+N + + +S+ F P D
Sbjct: 839 TREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAFHPQD 898
Query: 329 RHAL 340
+ +
Sbjct: 899 NNII 902
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +2
Query: 14 RGLKSTTLLVGTTGELR-IGVTLANNTIGLHSLRIN--DESEVKCLKQITQPGHQKDPRC 184
RG + L G TG +R I G L + D+ + L+++ GH C
Sbjct: 887 RGSELRATLKGHTGTVRAISSDRGKIVSGSDDLSVIVWDKQTTQLLEELK--GHDSQVSC 944
Query: 185 VAISSDNLAILSASADSIKLWNRANQTCLRSI 280
V + S + +A ++K+W+ C+ ++
Sbjct: 945 VKMLSGERVLTAAHDGTVKMWDVRTDMCVATV 976
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T GH C +S D+ +++ SAD + KLW+ + L + + SV FA GD
Sbjct: 47 TYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKELFTFK-FNAPTRSVDFAVGD 105
Query: 329 RHAL 340
R A+
Sbjct: 106 RLAV 109
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T GH C +S D+ +++ SAD + KLW+ + L + + SV FA GD
Sbjct: 47 TYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKELFTFK-FNAPTRSVDFAVGD 105
Query: 329 RHAL 340
R A+
Sbjct: 106 RLAV 109
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T GH C +S D+ +++ SAD + KLW+ + L + + SV FA GD
Sbjct: 47 TYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKELFTFK-FNAPTRSVDFAVGD 105
Query: 329 RHAL 340
R A+
Sbjct: 106 RLAV 109
>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains Pfam domains, PF02375: jmjN domain, PF02373:
jmjC domain and PF02928: C5HC2 zinc finger
Length = 708
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 261 KHVSGVFRWWAVGRAACASPPATGTR 338
K +S +FRW + + CASP T ++
Sbjct: 603 KKLSSMFRWAGIDQKFCASPATTSSK 628
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 107 LRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADS-IKLWNRANQTCLRSIP 283
+++ D E K ++ T GH+ + V + S S+D+ +K+W+ + C+++
Sbjct: 82 IKLWDVEEAKMVRAFT--GHRSNCSAVEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYK 139
Query: 284 VVGSRPSSVCFAPGDRHALCG 346
S++ F P R + G
Sbjct: 140 GHSRGISTIRFTPDGRWVVSG 160
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
T GH C IS D+ +++ SAD + KLW+ + L + G+ SV F+ GD
Sbjct: 74 TYRGHSGAVWCCDISRDSSRLITGSADQTAKLWDVKSGKELFTFK-FGAPARSVDFSVGD 132
Query: 329 RHAL 340
A+
Sbjct: 133 HLAV 136
>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226:
DnaJ domain
Length = 2554
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 98 LHSLRINDESEVKCLKQITQPGHQKDPRCVAIS 196
L +L+ + L ++T PGH+ DP C +S
Sbjct: 372 LDTLQTEGHCPIPVLPRLTMPGHRIDPPCGRVS 404
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.5 bits (58), Expect = 2.7
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAP-GDRH 334
GH D ++ S +N +LSAS D S++LW + CL I + +SV F P D H
Sbjct: 354 GHSGDILDISWSKNN-RLLSASVDNSVRLWQIGCEDCL-GIFSHNNYVTSVQFNPVDDDH 411
Query: 335 ALCG 346
+ G
Sbjct: 412 FISG 415
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.5 bits (58), Expect = 2.7
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAP-GDRH 334
GH D ++ S +N +LSAS D S++LW + CL I + +SV F P D H
Sbjct: 354 GHSGDILDISWSKNN-RLLSASVDNSVRLWQIGCEDCL-GIFSHNNYVTSVQFNPVDDDH 411
Query: 335 ALCG 346
+ G
Sbjct: 412 FISG 415
>At5g16810.1 68418.m01969 expressed protein
Length = 418
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 144 SR*HSPDIRRIHGVLLSVLITWPFYQLQRIPSNYGIGQIKHVSGV 278
SR + IRR+H V S++ + +++ R+ +YG + +G+
Sbjct: 36 SRGRNRPIRRLHAVTASLITSADSFEVGRLIGSYGFMNVTSYTGL 80
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLW 247
GH+ D +A+SS+N + SAS D I++W
Sbjct: 345 GHEGDITDLAVSSNNALVASASNDFVIRVW 374
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSIPVVGSRPSSVCFAP 322
GH + ++ S DN +LSAS D +++LW + CL + S +SV F P
Sbjct: 326 GHTGEVLDISWSKDNY-LLSASMDKTVRLWKVGSNDCL-GVFAHNSYVTSVQFNP 378
>At5g32470.1 68418.m03828 expressed protein
Length = 575
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 185 VAISSDNLAILSASADSI--KLWNRANQTCLRSIPVVGSRPSSVCFAPGD 328
VA SS +L+I S +++ KLW + N+ CL SI P +VC A G+
Sbjct: 50 VAFSS-SLSIPPTSEEALPGKLWIKFNRECLFSI----YSPFAVCLAAGN 94
>At3g52940.2 68416.m05836 C-14 sterol reductase / delta(14)-sterol
reductase / FACKEL (FK) identical to gi:9082182
Length = 262
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +3
Query: 186 LLSVLITWPFYQLQRIPSNYGIGQIKHVSG--VFRWW 290
+ VL+T Y R SN G HVSG V WW
Sbjct: 94 IFCVLVTLALYVTGRSSSNKGSSLKPHVSGNLVHDWW 130
>At3g52940.1 68416.m05835 C-14 sterol reductase / delta(14)-sterol
reductase / FACKEL (FK) identical to gi:9082182
Length = 369
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +3
Query: 186 LLSVLITWPFYQLQRIPSNYGIGQIKHVSG--VFRWW 290
+ VL+T Y R SN G HVSG V WW
Sbjct: 94 IFCVLVTLALYVTGRSSSNKGSSLKPHVSGNLVHDWW 130
>At3g24200.1 68416.m03037 monooxygenase family protein low
similarity to VisC [Escherichia coli][GI:216629];
contains Pfam profile: PF01360 Monooxygenase
Length = 507
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 59 LRIGVTLANNTIGLH-SLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAIL 217
+ + +LA+ + H ++ I D + + + I + GHQ DPR ++ ++ L
Sbjct: 66 IALAASLASKPLTKHLNVAIIDNNPLLGRRNIIEKGHQPDPRVSTVTPATISFL 119
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
T GH R +A+ D L LSAS D SI+LW + + L +
Sbjct: 185 TLSGHTDTVRGLAVMPD-LGFLSASHDGSIRLWALSGEVLLEMV 227
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
T GH R +A+ D L LSAS D SI+LW + + L +
Sbjct: 185 TLSGHTDTVRGLAVMPD-LGFLSASHDGSIRLWALSGEVLLEMV 227
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCL 271
GH D +A S NL +LSAS D +++LW CL
Sbjct: 270 GHTGDVLDLAWSDSNL-LLSASKDKTVRLWRTGCDQCL 306
>At5g20340.1 68418.m02420 beta-1,3-glucanase (BG5) identical to
plant beta-1,3-glucanase bg5 GI:2808439 [Arabidopsis
thaliana]
Length = 354
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADSIKLWNRAN 259
GH+ V + +LA LSAS +++K W N
Sbjct: 87 GHRDIAVTVGVRDQDLAALSASEEAVKGWFATN 119
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLR 274
GH D ++ S L + S+ +++LW+ Q+CL+
Sbjct: 517 GHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLK 554
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 233 SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHALCGCG 352
+IK WN CL S+ GS+ S+ ++ +R L G
Sbjct: 340 TIKFWNTHTGACLNSVD-TGSQVCSLLWSKNERELLSSHG 378
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 233 SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHALCGCG 352
+IK WN CL S+ GS+ S+ ++ +R L G
Sbjct: 330 TIKFWNTHTGACLNSVD-TGSQVCSLLWSKNERELLSSHG 368
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 164 HQKDPRCVAISSDNLAILSASAD--SIKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHA 337
H+K V S L++ +D S+KLWN + CL +I + + V F+P H
Sbjct: 795 HEKRAWSVDFSEACPTKLASGSDDCSVKLWNINERNCLGTIRNI-ANVCCVQFSPQSSHL 853
Query: 338 L 340
L
Sbjct: 854 L 854
>At3g15330.1 68416.m01935 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 305
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 2 HEAARGLKSTTLLVGTTGELRIGVTLANNTIGLHSLRINDESEV-KCLKQITQPGHQKDP 178
HEA K T LV G ++ + L + +HS++ ++ S+ K L + + G +KD
Sbjct: 56 HEAVSFTKHLTTLVSVYGRKKLHLVLDLDHTLIHSMKTSNLSKAEKYLIKEEKSGSRKDL 115
Query: 179 R 181
R
Sbjct: 116 R 116
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWN 250
T GH+K V D+ I+SAS D S+KLWN
Sbjct: 889 TLAGHEKAVSYVKFM-DSETIVSASTDNSLKLWN 921
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 152 TQPGHQKDPRCVAISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
++ GH+ V+ S D+ +L+ SAD S K+W A + S+
Sbjct: 91 SEDGHKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAEDGTIGSV 134
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 212 ILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCF 316
+ ++ DSI+L++ A+ TCL++I VCF
Sbjct: 49 VTASDDDSIRLYDVASATCLKTINSKKYGVDLVCF 83
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 212 ILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCF 316
+ ++ DSI+L++ A+ TCL++I VCF
Sbjct: 46 VTASDDDSIRLYDVASATCLKTINSKKYGVDLVCF 80
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 236 IKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHALCGCG 352
IK WN CL S+ GS+ S+ ++ +R L G
Sbjct: 294 IKFWNTHTGACLNSVE-TGSQVCSLLWSKSERELLSSHG 331
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 236 IKLWNRANQTCLRSIPVVGSRPSSVCFAPGDRHALCGCG 352
IK WN CL S+ GS+ S+ ++ +R L G
Sbjct: 327 IKFWNTHTGACLNSVE-TGSQVCSLLWSQSERELLSSHG 364
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/32 (28%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +2
Query: 188 AISSDNLAILSASAD-SIKLWNRANQTCLRSI 280
+++ D +I S S D S+++W+R++ C++++
Sbjct: 262 SLALDMTSIFSGSWDMSVRIWDRSSMKCVKTL 293
>At3g27150.1 68416.m03396 kelch repeat-containing F-box family
protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
F-box domain
Length = 422
Score = 25.8 bits (54), Expect = 8.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 299 PSSVCFAPGDRHALC 343
PS +CF GD+ +LC
Sbjct: 151 PSDICFLHGDKESLC 165
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 161 GHQKDPRCVAISSDNLAILSASADSIKLWNRANQTCLRSIPVVGSRPSSVCFA 319
GH+++ C +SSD ++S+S S L + + L +VG + S+C +
Sbjct: 2747 GHRRELVCCCVSSDQGVVVSSSESSDVLLHSIRKGRLIR-RLVGVKADSLCIS 2798
>At1g33220.1 68414.m04104 beta-1,3-glucanase, putative similar to
plant beta-1,3-glucanase bg4 GI:2808438 from
[Arabidopsis thaliana]
Length = 335
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 89 TIGLHSLRINDESEVKCLKQITQPGHQKDPRCVAISSDNLAILSASADSIKLWNRAN 259
+IG+ +RI D + + L + GH+ V + +L LSA+ +++K W N
Sbjct: 57 SIGITKIRIFDP-KTEVLNALR--GHRNIEVTVGVRDQDLGALSANEEAVKGWFATN 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,539,246
Number of Sequences: 28952
Number of extensions: 164635
Number of successful extensions: 494
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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