Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N12
(402 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 148 3e-37
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 133 8e-33
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 29 0.36
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 0.82
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 4.4
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 25 4.4
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.8
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 24 7.7
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 24 7.7
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 148 bits (359), Expect = 3e-37
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISNAKMQPTHPIRLGLALNFSVF 292
Y KMKGDYYRYLAE A GE R + S + Y+ A EI+ A++ PTHPIRLGLALNFSVF
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVF 182
Query: 293 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
YYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKD
Sbjct: 183 YYEILNSPDRACYLAKQAFDEAISELDSLSEESYKD 218
Score = 39.9 bits (89), Expect = 1e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +3
Query: 39 ICYDVLCLLDKHLIPKASNPESKVFTSK 122
IC D+L +L+KHLIP A++ ESKVF K
Sbjct: 98 ICQDILTVLEKHLIPNAASAESKVFYYK 125
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 133 bits (322), Expect = 8e-33
Identities = 61/96 (63%), Positives = 76/96 (79%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISNAKMQPTHPIRLGLALNFSVF 292
Y KMKGDYYRYLAE GE + S +AY+ A +I+ A++ PT P+RLGLALNFSVF
Sbjct: 122 YYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVF 181
Query: 293 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
YYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKD
Sbjct: 182 YYEILDSPESACHLAKQVFDEAISELDSLSEESYKD 217
Score = 41.1 bits (92), Expect = 6e-05
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 36 EICYDVLCLLDKHLIPKASNPESKVFTSK 122
+IC+DVL +L+KHLIP A+ ESKVF K
Sbjct: 96 DICHDVLSVLEKHLIPAATTGESKVFYYK 124
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 28.7 bits (61), Expect = 0.36
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 34 EKSAMMSCVYWTSTLYLKLVIQKVKYLPQN 123
EK A++S W+ LYL+ K+K +P+N
Sbjct: 321 EKDAILSSSSWSQLLYLRCSSCKLKSIPKN 350
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 27.5 bits (58), Expect = 0.82
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 140 RYLAEVATG-ETRHSVVEDSQKAYQDAFEISNAKMQPTHP-IRLGLALNFS 286
RY+ ++ E R ED+++A + ++ ++A +QP H I L LA+N S
Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 4.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 164 LWPLLRDTCSNLPSF*GKY 108
+W +LRDTCS L G Y
Sbjct: 535 IWAVLRDTCSFLQGSSGPY 553
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 4.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 107 SIYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQD 214
S++++ K + Y YL +VA HS ++ K+ Q+
Sbjct: 250 SLHIEKKPEVYEYLDKVAAWIYEHSKPSETVKSEQE 285
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 24.6 bits (51), Expect = 5.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 250 CGLHFCIADLKSILVCFL*ILYNRMSGFSCGHFC 149
C L+F + + K+ L+ I+Y + GFS H C
Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 24.2 bits (50), Expect = 7.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 266 GLALNFSVFYYEI--LNSPDKACQLAKQAFDDAIAELDTLNEDSY 394
G A N F+ + + S KACQ + Q A+ EL+ +D Y
Sbjct: 18 GFANNKDAFFQTLGGVQSIQKACQTSFQNPKQALLELNLRPKDKY 62
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 24.2 bits (50), Expect = 7.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 145 SRRSGHRRNQTFCCRGFTE 201
++R HR QTF C F E
Sbjct: 677 NKRDSHREPQTFNCDSFNE 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,779
Number of Sequences: 5004
Number of extensions: 37124
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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