Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N12
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 149 6e-37
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 149 6e-37
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 147 3e-36
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 144 2e-35
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 144 2e-35
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 144 2e-35
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 91 3e-24
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 64 4e-11
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560... 27 5.6
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389 26 9.7
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 26 9.7
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 149 bits (362), Expect = 6e-37
Identities = 69/96 (71%), Positives = 81/96 (84%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISNAKMQPTHPIRLGLALNFSVF 292
YLKMKGDYYRYLAE TG R E++ AY+ A +I+ A++ PTHPIRLGLALNFSVF
Sbjct: 128 YLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVF 187
Query: 293 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
YYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKD
Sbjct: 188 YYEILNSPDRACNLAKQAFDEAISELDTLSEESYKD 223
Score = 35.5 bits (78), Expect = 0.016
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 36 EICYDVLCLLDKHLIPKASNPESKVFTSK 122
+IC +L LL+ HL+P ++ PESKVF K
Sbjct: 102 KICDGILKLLESHLVPSSTAPESKVFYLK 130
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 149 bits (362), Expect = 6e-37
Identities = 69/96 (71%), Positives = 81/96 (84%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISNAKMQPTHPIRLGLALNFSVF 292
YLKMKGDYYRYLAE TG R E++ AY+ A +I+ A++ PTHPIRLGLALNFSVF
Sbjct: 346 YLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVF 405
Query: 293 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
YYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKD
Sbjct: 406 YYEILNSPDRACNLAKQAFDEAISELDTLSEESYKD 441
Score = 37.1 bits (82), Expect = 0.005
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 36 EICYDVLCLLDKHLIPKASNPESKVFTSK 122
+IC +L LLD HL+P ++ PESKVF K
Sbjct: 320 KICDGILKLLDSHLVPSSTAPESKVFYLK 348
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 147 bits (356), Expect = 3e-36
Identities = 69/96 (71%), Positives = 78/96 (81%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISNAKMQPTHPIRLGLALNFSVF 292
YLKMKGDY+RYLAE TG R E + AY+ A +I+ A + PTHPIRLGLALNFSVF
Sbjct: 122 YLKMKGDYHRYLAEFKTGAERKEAAESTMVAYKAAQDIALADLAPTHPIRLGLALNFSVF 181
Query: 293 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
YYEILNSPDKAC LAKQAFD+AI+ELDTL E+SYKD
Sbjct: 182 YYEILNSPDKACNLAKQAFDEAISELDTLGEESYKD 217
Score = 33.9 bits (74), Expect = 0.048
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 36 EICYDVLCLLDKHLIPKASNPESKVFTSK 122
+IC +L LLD HL+P ++ ESKVF K
Sbjct: 96 KICDGILKLLDSHLVPSSTAAESKVFYLK 124
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 144 bits (350), Expect = 2e-35
Identities = 66/96 (68%), Positives = 79/96 (82%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISNAKMQPTHPIRLGLALNFSVF 292
YLKMKGDY+RYLAE +G+ R E + AY+ A +I+ A + PTHPIRLGLALNFSVF
Sbjct: 105 YLKMKGDYHRYLAEFKSGDERKQAAESTMNAYKAAQDIALADLAPTHPIRLGLALNFSVF 164
Query: 293 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
YYEILNSPD+AC LAKQAFD+AI+ELD+L E+SYKD
Sbjct: 165 YYEILNSPDRACNLAKQAFDEAISELDSLGEESYKD 200
Score = 35.5 bits (78), Expect = 0.016
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +3
Query: 39 ICYDVLCLLDKHLIPKASNPESKVFTSK 122
IC +L LLD HL+P A ESKVF K
Sbjct: 80 ICDGILALLDSHLVPSAGAAESKVFYLK 107
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 144 bits (349), Expect = 2e-35
Identities = 67/96 (69%), Positives = 78/96 (81%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISNAKMQPTHPIRLGLALNFSVF 292
YLKMKGDY+RYLAE TG R + + AYQ A +I+ ++ PTHPIRLGLALNFSVF
Sbjct: 132 YLKMKGDYHRYLAEFKTGAERKDAADATLAAYQAAQDIAMKELSPTHPIRLGLALNFSVF 191
Query: 293 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
YYEILNSPD+AC LAKQAFD+AI+ELDTL E+SYKD
Sbjct: 192 YYEILNSPDRACTLAKQAFDEAISELDTLGEESYKD 227
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 39 ICYDVLCLLDKHLIPKASNPESKVFTSK 122
IC +L LLD+ L+P A+ ++KVF K
Sbjct: 107 ICAGILRLLDERLVPAAAAVDAKVFYLK 134
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 144 bits (349), Expect = 2e-35
Identities = 68/96 (70%), Positives = 78/96 (81%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISNAKMQPTHPIRLGLALNFSVF 292
YLKMKGDY+RYLAE +G R E++ AY+ A +I+ A + THPIRLGLALNFSVF
Sbjct: 127 YLKMKGDYHRYLAEFKSGAERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVF 186
Query: 293 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
YYEILNSPD+AC LAKQAFDDAIAELDTL E+SYKD
Sbjct: 187 YYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKD 222
Score = 35.1 bits (77), Expect = 0.021
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 36 EICYDVLCLLDKHLIPKASNPESKVFTSK 122
+IC +L LLD HL+P A+ ESKVF K
Sbjct: 101 KICDGILKLLDSHLVPSATAAESKVFYLK 129
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 91.1 bits (216), Expect(2) = 3e-24
Identities = 41/62 (66%), Positives = 51/62 (82%)
Frame = +2
Query: 215 AFEISNAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSY 394
A + + + PT PIRLGLALN SVFY EI+NSPDKACQLAK AFD+A+AEL +L+E++Y
Sbjct: 146 ASKTAQTDLTPTDPIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENY 205
Query: 395 KD 400
KD
Sbjct: 206 KD 207
Score = 37.5 bits (83), Expect(2) = 3e-24
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 125 KGDYYRYLAEVATGETRHSVVEDSQKAYQ--DAFEISN 232
KGDYYRYLAE TG + V E S AY+ D F I N
Sbjct: 85 KGDYYRYLAEFKTGTEKIEVSELSLNAYEACDPFFIFN 122
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 64.1 bits (149), Expect = 4e-11
Identities = 40/96 (41%), Positives = 55/96 (57%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISNAKMQPTHPIRLGLALNFSVF 292
+ KMKGDYYRYLAE +TG + + + S AYQ P A FS+
Sbjct: 119 FYKMKGDYYRYLAEFSTGTEKKAATDQSLMAYQ------------AWPC----AQLFSLL 162
Query: 293 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
EI+NSP++A Q+AKQA D+A AE+++ + YKD
Sbjct: 163 --EIMNSPERASQVAKQALDEATAEINSAGVEGYKD 196
>01_07_0014 -
40455673-40455723,40455815-40455892,40455987-40456049,
40456250-40456390,40456851-40456949,40457403-40457477,
40457556-40457652,40457738-40457805,40458456-40458512,
40458613-40458671,40458798-40458921,40459208-40459264,
40459378-40459457,40459585-40459793,40459868-40459986
Length = 458
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 299 EILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
E+ + A LAK A DD EL LN D+Y +
Sbjct: 73 EVAQAKAAAKALAKGAVDDVADELKELNMDNYDE 106
>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
Length = 1024
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 190 LYNRMSGFSCGHFCEIPVVISLHFEVNTL 104
LYN + G F ++PV++ LH N L
Sbjct: 199 LYNNIDGNIPDDFAKLPVLVYLHLGANKL 227
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 169 FSCGHFCEIPVVISLHFEVNTLL 101
F+ H CEI + + +HF ++TLL
Sbjct: 694 FNSYHHCEIIICMRIHFFMHTLL 716
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,774,116
Number of Sequences: 37544
Number of extensions: 241488
Number of successful extensions: 675
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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