Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N12
(402 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 3e-32
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0) 132 1e-31
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.029
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 31 0.46
SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.61
SB_14160| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.61
SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.61
SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_8459| Best HMM Match : DUF408 (HMM E-Value=0.62) 29 1.9
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 2.5
SB_42675| Best HMM Match : TFIIS_C (HMM E-Value=0.63) 28 2.5
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07) 28 2.5
SB_21152| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 27 4.3
SB_38061| Best HMM Match : DUF995 (HMM E-Value=4) 27 4.3
SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_46709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_19000| Best HMM Match : Ery_res_leader2 (HMM E-Value=0.69) 27 5.7
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17) 27 7.6
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_3631| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
SB_42818| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
SB_6726| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 134 bits (323), Expect = 3e-32
Identities = 65/98 (66%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEIS--NAKMQPTHPIRLGLALNFS 286
YLKMKGDYYRY EVA + R VV+ + KAY +A EI+ + K+ PT PIRLGLALNFS
Sbjct: 97 YLKMKGDYYRYEGEVAGADRRREVVQKAMKAYSEAQEIAEKDPKLPPTDPIRLGLALNFS 156
Query: 287 VFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
VFYYEI+ +AC LAK+AFDDAIAELDTL+ED YKD
Sbjct: 157 VFYYEIVEDSKQACDLAKKAFDDAIAELDTLSEDQYKD 194
Score = 100 bits (240), Expect = 4e-22
Identities = 49/77 (63%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Frame = +2
Query: 179 SVVEDSQKAYQDAFEIS---NAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAF 349
+VVE + +AY++A E + + K+ PT PIRLGLALNFSVF+YEI + ++AC+LAKQAF
Sbjct: 207 TVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLAKQAF 266
Query: 350 DDAIAELDTLNEDSYKD 400
DDAIAELD+LNED YKD
Sbjct: 267 DDAIAELDSLNEDQYKD 283
Score = 33.1 bits (72), Expect = 0.087
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 36 EICYDVLCLLDKHLIPKASNPESKVFTSK 122
E+C VL LL+ LIP A + ESKVF K
Sbjct: 71 EVCETVLKLLESKLIPNAQSTESKVFYLK 99
>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
Length = 248
Score = 132 bits (319), Expect = 1e-31
Identities = 61/96 (63%), Positives = 77/96 (80%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISNAKMQPTHPIRLGLALNFSVF 292
YLKM+GDY+RYL EVA G++R +E S++AY+DA ++ P+HPIRLGLALNFSVF
Sbjct: 127 YLKMRGDYHRYLVEVAEGDSRKENIEKSREAYKDA-SAKAEELSPSHPIRLGLALNFSVF 185
Query: 293 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 400
YYEI N P +AC+LAK+AFDDAIA LD L ++SYKD
Sbjct: 186 YYEIENKPPEACKLAKEAFDDAIAVLDNLKDESYKD 221
>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 34.7 bits (76), Expect = 0.029
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 113 YLKMKGDYYRYLAEVATGE 169
Y K+KGDYYRYLAE + G+
Sbjct: 197 YFKLKGDYYRYLAEFSHGQ 215
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 30.7 bits (66), Expect = 0.46
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 39 ICYDVLCLLDKHLIPKASNPESKVFTSK 122
IC ++L LLD LI + + ESKVF +K
Sbjct: 97 ICGEILSLLDDSLIKNSQSEESKVFYNK 124
>SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 30.3 bits (65), Expect = 0.61
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 362 RSHHRTPVWRADTPCLVNLISHNRRRRNLTPN 267
RSHH+ V PC +L+S RR+N+TP+
Sbjct: 194 RSHHQWSVPPGTDPC-TDLLSRGGRRQNMTPH 224
>SB_14160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 30.3 bits (65), Expect = 0.61
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 362 RSHHRTPVWRADTPCLVNLISHNRRRRNLTPN 267
RSHH+ V PC +L+S RR+N+TP+
Sbjct: 33 RSHHQWSVPPGTDPC-TDLLSRGGRRQNMTPH 63
>SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 926
Score = 30.3 bits (65), Expect = 0.61
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +1
Query: 229 QCKNAAHTPNKAGFGVKFLRLLL*DIKFTRQGVSARQTGVR*CDRGTRHTER 384
+C++ + P + GFG FL++LL + F ++G+ D+G R +E+
Sbjct: 245 ECESPGNKPAR-GFGRTFLKVLLLPLLFLKKGLREISENALIVDKGQRSSEK 295
>SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 325 VSARQTGVR*CDRGTRHT 378
V RQ+GVR C RG RHT
Sbjct: 148 VMVRQSGVRYCSRGIRHT 165
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 2 DPPGCRNSARGRN 40
DPPGCRNS G+N
Sbjct: 93 DPPGCRNSIAGKN 105
>SB_8459| Best HMM Match : DUF408 (HMM E-Value=0.62)
Length = 581
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 146 LAEVATGETRHSVVEDSQKAYQDAFEISNAK 238
+ V+TGE HS S ++ ++AFE NAK
Sbjct: 347 IINVSTGEVLHSPSPASPESIREAFEAENAK 377
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 69 KHLIPKASNPESKV-FTSK*REITTGISQKWPQEKPDILL 185
+HL + S P+S V FT + ++ + K PQ+ PDI +
Sbjct: 2028 RHLNVRVSTPKSSVVFTLRAFDLLQNMPAKLPQQSPDIFV 2067
>SB_42675| Best HMM Match : TFIIS_C (HMM E-Value=0.63)
Length = 190
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 49 MSCVYWTSTLYLKLVIQKVKYLPQNEGRLLQVSR 150
+ C YW S LY K +Q + Y +N L Q SR
Sbjct: 158 VGCTYWLSGLYKKETVQDMPY-EENAAGLKQHSR 190
>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
Length = 711
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -2
Query: 374 CRVPRSHHRTPVWRADTPCLVNL--ISHNRRRRN--LTPNPALL 255
CR+P S HR R ++ C N+ +S R R LTP P LL
Sbjct: 651 CRLPSSRHRRRNVRGNSRCRGNVRALSSPMRARTLPLTPRPPLL 694
>SB_21152| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 63 VNTRHHSRFLPRAEFLQPGGS 1
VN +H ++ L R EFLQPGGS
Sbjct: 2 VNKKHKAKSL-RIEFLQPGGS 21
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 146 LAEVATGETRHSVVEDSQKAYQDAFEISNAK 238
+ V+TGE HS S ++ + AFE NAK
Sbjct: 278 IINVSTGEVLHSPSPASPESIRKAFEAENAK 308
>SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)
Length = 220
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 1 GSPGLQEFGTREKSAMMSCVYW 66
GSPGLQEF R+ SC ++
Sbjct: 16 GSPGLQEFDMRKCKGAESCTHY 37
>SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 2 DPPGCRNSARGRN 40
DPPGCRNS G N
Sbjct: 17 DPPGCRNSIEGCN 29
>SB_46709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.1 bits (57), Expect = 5.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 2 DPPGCRNSARGRNL 43
DPPGCRNS + R++
Sbjct: 17 DPPGCRNSIQARSV 30
>SB_19000| Best HMM Match : Ery_res_leader2 (HMM E-Value=0.69)
Length = 310
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 146 LAEVATGETRHSVVEDSQKAYQDAFEISNAKMQPTHP 256
LA G+ RH + A QDA I +A+++PT P
Sbjct: 267 LASYTAGDMRHDLDLRLPAANQDACYILHARIRPTPP 303
>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
Length = 473
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = -2
Query: 398 PCTSPRSVCRVPRSHH-RTPVWRADTPCLVNLISHNRRRRNLTPNPALLGVWAAFLHC*S 222
P +P + R HH R P TP + + RR+ P+P G A
Sbjct: 322 PLPTPGTTTADTRHHHCRHPAPPPPTPGTTTADTRHHHRRHPAPSPPTTGTITADTRHHH 381
Query: 221 QKHP 210
++HP
Sbjct: 382 RRHP 385
Score = 26.2 bits (55), Expect = 10.0
Identities = 16/64 (25%), Positives = 24/64 (37%)
Frame = -2
Query: 401 SPCTSPRSVCRVPRSHHRTPVWRADTPCLVNLISHNRRRRNLTPNPALLGVWAAFLHC*S 222
SP T+ H R P TP + + + RR+ P+P G A
Sbjct: 366 SPPTTGTITADTRHHHRRHPAPSPPTPGTITADTRHHHRRHPAPSPLTPGTITADTRHHH 425
Query: 221 QKHP 210
++HP
Sbjct: 426 RRHP 429
Score = 26.2 bits (55), Expect = 10.0
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = -2
Query: 401 SPCTSPRSVCRVPRSHHRT-PVWRADTPCLVNLISHNRRRRNLTPNPALLGVWAAFLHC* 225
SP T P ++ R HHR P TP + + + RR+ P P + H
Sbjct: 388 SPPT-PGTITADTRHHHRRHPAPSPLTPGTITADTRHHHRRHPAPTPGTITANTRHHH-- 444
Query: 224 SQKHPGMLSVNP--LQQNVWFLL 162
++HP P + + W+LL
Sbjct: 445 -RRHPAPSPPAPGTITADTWYLL 466
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 158 ATGETRHS-VVEDSQKAYQDAFEISNAKMQPTHPIRLGLALNFSVFYYEILNS 313
A GETR + D+ +A +D A+ Q + ALN S+F++E++NS
Sbjct: 4020 ALGETRRKRSLVDTPEANED-----KAQHQVPDAEKCQFALNASLFFFEVINS 4067
>SB_3631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 1 GSPGLQEFGTREKSAMMSCVYW 66
GSPGLQEF R + + YW
Sbjct: 16 GSPGLQEFDKRAECPELLHPYW 37
>SB_42818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 42 RFLPRAEFLQPGGS 1
R++ R EFLQPGGS
Sbjct: 20 RYIHRIEFLQPGGS 33
>SB_6726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -2
Query: 53 DIIADFSLVPNSCSPGD 3
D IADF V NSCSPGD
Sbjct: 11 DKIADF--VSNSCSPGD 25
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,722,390
Number of Sequences: 59808
Number of extensions: 282918
Number of successful extensions: 2278
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2274
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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