Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N11
         (445 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   2.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   9.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   9.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   9.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   9.2  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 410 YSWLASTFSVCKPLMEATGTYVTRVNSLCAE 318
           Y+W        K L+E   T +   N LC+E
Sbjct: 44  YTWKCENQKCVKYLVEDEETSLATCNMLCSE 74


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 213 YVWSTHLFFSESPDLLD 163
           Y + TH+FF ++ ++ D
Sbjct: 609 YEFETHIFFDDAFEISD 625


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 213 YVWSTHLFFSESPDLLD 163
           Y + TH+FF ++ ++ D
Sbjct: 609 YEFETHIFFDDAFEISD 625


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 213 YVWSTHLFFSESPDLLD 163
           Y + TH+FF ++ ++ D
Sbjct: 609 YEFETHIFFDDAFEISD 625


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 213 YVWSTHLFFSESPDLLD 163
           Y + TH+FF ++ ++ D
Sbjct: 609 YEFETHIFFDDAFEISD 625


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,979
Number of Sequences: 336
Number of extensions: 2473
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9985735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)