Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N11
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...   115   3e-27
SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy...    28   0.74 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   3.0  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   5.2  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   6.9  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.1  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score =  115 bits (277), Expect = 3e-27
 Identities = 57/102 (55%), Positives = 73/102 (71%)
 Frame = +1

Query: 67  KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLNKYLW 246
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T +VRVD  LNK +W
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65

Query: 247 SKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIK 372
            +G+RNVP           +D++D A  L+T V  V VA+ K
Sbjct: 66  KRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANPK 105


>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 133

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 90  NDFIYGRFAFPLSFGFCHCGRRISCTKS 7
           N +IYG      S+G C C  R++ TK+
Sbjct: 39  NTYIYGANVENASYGNCICAERVAITKA 66


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 93   SNDFIYGRFAFPLSFGFCH 37
            S+DF  GRF F +   FCH
Sbjct: 1271 SSDFSIGRFKFLIKLLFCH 1289


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +2

Query: 14  VHEILRP---QWQNPKERGKANLP 76
           +HE++ P   QW NP E  K  +P
Sbjct: 271 IHELICPCFLQWNNPTEDDKKQIP 294


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 76  INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 174
           INE VT +Y  N+   + G+G  ++A   +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 192 TNGYSRRKSRYPPKQISLVKRSQE 263
           T G +  +SR PP+QIS+    +E
Sbjct: 83  TKGRAHPRSRRPPRQISIDSAKKE 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,956
Number of Sequences: 5004
Number of extensions: 39691
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)