Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N11
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...   156   8e-39
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    85   2e-17
U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone...    28   2.7  
AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear recep...    28   2.7  
AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family ...    28   2.7  
AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL023828-5|CAA19450.1|  260|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score =  156 bits (378), Expect = 8e-39
 Identities = 69/120 (57%), Positives = 90/120 (75%)
 Frame = +1

Query: 46  PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDT 225
           PK E+K +S INEVVTREYT+++H R+ G+G KKRAPRAI EI++FA+ QM T DVRVDT
Sbjct: 3   PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDT 62

Query: 226 RLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 405
           +LNK++WSKG++NVP+          N+DEDSA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 63  KLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 37/70 (52%), Positives = 48/70 (68%)
 Frame = +1

Query: 196 MGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKG 375
           M T DVRVDT+LNK++WSKG++NVP+          N+DEDSA KL+TL TYVP  +  G
Sbjct: 1   MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHG 60

Query: 376 LQTENVDASQ 405
           L   NVD+ +
Sbjct: 61  LTNVNVDSEE 70


>U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 10 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 198 GYSRRKSRYPPKQISLVKRSQECS 269
           GY++R  RYPP  I  V+ S ECS
Sbjct: 96  GYTKRTRRYPP--IKKVEASDECS 117


>AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-10 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 198 GYSRRKSRYPPKQISLVKRSQECS 269
           GY++R  RYPP  I  V+ S ECS
Sbjct: 96  GYTKRTRRYPP--IKKVEASDECS 117


>AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family of
           potassium channelsprotein 45, isoform a protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 283 HEHGMEHS*LL--LTKDICLGGYLLLRLEYP 197
           H+ G+ H  L+  L   ICLGG+L  +LE P
Sbjct: 45  HKFGIRHITLISILAAYICLGGFLFQKLESP 75


>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +1

Query: 46  PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRA---IKEIRRF-AEKQMGTPDV 213
           PK E +  + I E + R Y++   +RL  +     APRA    +  RRF A K+M   + 
Sbjct: 71  PKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKEA 130

Query: 214 RVDTRLNKYLWSKGVRNVP 270
            ++ + N+ L ++G+   P
Sbjct: 131 SIEEQRNR-LMAEGIAVPP 148


>Z11126-2|CAA77473.1|  197|Caenorhabditis elegans Hypothetical
           protein ZK643.2 protein.
          Length = 197

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 330 TVYPCNICARCLHQGFADREC*RQPRIQISFTKKKK 437
           T++PCN CA+ L Q    +    + R +++F   KK
Sbjct: 139 TLFPCNKCAQMLIQSRVKKVYFLENRDELAFRASKK 174


>AL023828-5|CAA19450.1|  260|Caenorhabditis elegans Hypothetical
           protein Y17G7B.3 protein.
          Length = 260

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 402 AGVNILCLQTLDGGNGHICY 343
           AG+ I CL T    +GHICY
Sbjct: 100 AGLQIKCLSTPCHTSGHICY 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,827,201
Number of Sequences: 27780
Number of extensions: 225853
Number of successful extensions: 620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)