Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N11
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...   130   4e-31
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)           128   2e-30
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)           127   3e-30
At5g24630.1 68418.m02909 expressed protein  ; expression support...    28   3.3  
At4g17250.1 68417.m02594 expressed protein                             27   4.3  
At1g27720.1 68414.m03388 transcription initiation factor IID (TF...    27   4.3  
At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727 ...    27   5.7  
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    27   7.5  
At2g02020.1 68415.m00137 proton-dependent oligopeptide transport...    26   10.0 

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score =  130 bits (314), Expect = 4e-31
 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
 Frame = +1

Query: 55  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLN 234
           E+KG+    EVVTREYT+NLH+RLH   FKK+AP+AIKEIR+FAEK+MGT DVRVD +LN
Sbjct: 3   EKKGRK--EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLN 60

Query: 235 KYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 396
           K +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score =  128 bits (308), Expect = 2e-30
 Identities = 61/116 (52%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
 Frame = +1

Query: 55  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLN 234
           E+KG+    EV+TREYT+NLH+RLH   FKK+AP+AIKEIR+FAEK MGT DVRVD +LN
Sbjct: 3   EKKGRK--EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60

Query: 235 KYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 396
           K +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score =  127 bits (307), Expect = 3e-30
 Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
 Frame = +1

Query: 61  KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLNKY 240
           KGK    EVVTREYT+NLH+RLH   FKK+AP AIKEIR+FA K MGT DVRVD +LNK 
Sbjct: 3   KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQ 62

Query: 241 LWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 405
           +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++  +
Sbjct: 63  IWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119


>At5g24630.1 68418.m02909 expressed protein  ; expression supported
           by MPSS
          Length = 531

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 13  GTRNSTTTMAKPKGERKGKSAINE 84
           GT   T T AKPK + KG++ I +
Sbjct: 480 GTEEETNTKAKPKAKAKGETVIGK 503


>At4g17250.1 68417.m02594 expressed protein
          Length = 416

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 103 TVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVD 222
           TV   KR   + +KKR   A+K+   + E++ G P ++ D
Sbjct: 169 TVPATKRFLELKYKKRYEFALKQCPSYTERRRGVPKLKED 208


>At1g27720.1 68414.m03388 transcription initiation factor IID
           (TFIID) component TAF4 family protein contains Pfam
           profile PF05236: Transcription initiation factor TFIID
           component TAF4 family
          Length = 682

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 235 KYLWSKGVRNVPFXXXXXXXXXXNDD-EDSAHKLFTLVTYVPVASIKGLQTENVDAS 402
           +YL  +GV NVP           NDD E  + K+    +    +S+    T  +D+S
Sbjct: 321 RYLVQQGVTNVPLKQKNAIPISSNDDLEKQSSKMGLFTSTTSASSVFPSMTTQLDSS 377


>At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727
           myosin heavy chain PCR43 [Arabidopsis thaliana]
          Length = 556

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 440 VFFFFCKTYLYSWLASTFSVCKPLMEATGTYVTRVNSLCAE 318
           + FFFC  ++ +WL S     K L +A      R   L  E
Sbjct: 30  LIFFFCLMFIQTWLHSEQEAAKDLRKALSEAEARNLELATE 70


>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
            kinase, putative similar to brassinosteroid insensitive
            protein
          Length = 1143

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 367  WRQRAHMLQG*TVCVLSLHHHCVCEIVLHEHGMEHS*LLLTKDI 236
            W +R  + +G    +  LHH+C+  I+     M+ S +LL +D+
Sbjct: 937  WEERKKIAKGAAKGLCFLHHNCIPHII--HRDMKSSNVLLDQDM 978


>At2g02020.1 68415.m00137 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 545

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 279 NTEWNIPDSF*PKIFV*AGIYSYVWSTHLFFSESPDLLDS 160
           N  W IP  F   +   AG++ +V     F+ +SPD + S
Sbjct: 435 NIFWQIPQYF---LMGTAGVFFFVGRIEFFYEQSPDSMRS 471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,192,279
Number of Sequences: 28952
Number of extensions: 208857
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)