Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N10
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   5.4  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   7.2  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.5  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   9.5  

>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -3

Query: 449 LYLHLIPVIHDYNVS---KMKH*KFGSL 375
           +Y H +P+I  Y+ S    MKH +FG L
Sbjct: 343 MYRHCVPIIEIYDTSIKFYMKHGRFGLL 370


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 470 TKKERHNLYLHLIPVIHDYNVSKMKH*KFGSLLTLPL-QIHAILFIHLKYLL 318
           T  E H L + + P + DY +    H  +    TLP+  +HAI  + L+Y+L
Sbjct: 236 TPAELHKLNIPVSPTVSDYKIMADNHSLYN---TLPVATLHAI-NLGLEYML 283


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 384 KFSVFHFRHVIIMDNGYQMQI*IVPLLLCLASIKIL 491
           K SV HF  +I ++  YQ +  +  L++C + I +L
Sbjct: 43  KESVLHFLELIFINLKYQSKKWLYSLVICKSLIALL 78


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 420 MDNGYQMQI*IVPLLLCLASIKILHTFK--STMQILLS*VQY 539
           M  GY  ++ +     CL+++ +LH      T Q++L  V+Y
Sbjct: 322 MSGGYDPKMIVYSFFCCLSAVGVLHMLNPFRTGQVVLFEVRY 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,071
Number of Sequences: 5004
Number of extensions: 31323
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)