Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N10
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820...    29   3.1  
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434     28   4.1  

>03_05_0824 +
           27980191-27980243,27980633-27980671,27980974-27982023,
           27983097-27983262,27983439-27983549,27983637-27983688,
           27984691-27984859,27985604-27985883
          Length = 639

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 449 LYLHLIPVIHDYNVSKMKH*KFGSLLTLPLQIHAI 345
           LYL +I ++ +YNVSK       SL   PL I A+
Sbjct: 584 LYLGIIDILQEYNVSKRVEHAVKSLKFDPLSISAV 618


>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
          Length = 418

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 365 PLQIHAILFIHLKYLLFSICGYL 297
           P+ +HAI  +   Y+ F +CGYL
Sbjct: 249 PVLLHAIAGVTAVYVCFGVCGYL 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,564,502
Number of Sequences: 37544
Number of extensions: 167345
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)