Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N09
(480 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 207 3e-54
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 204 3e-53
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi... 29 2.1
At4g24170.1 68417.m03468 kinesin motor family protein contains P... 28 3.7
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 28 3.7
At5g07820.1 68418.m00896 expressed protein 27 5.0
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 27 5.0
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH... 27 6.5
At2g43795.1 68415.m05444 hypothetical protein 27 6.5
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 27 6.5
At4g14160.3 68417.m02185 transport protein, putative similar to ... 27 8.7
At4g14160.2 68417.m02186 transport protein, putative similar to ... 27 8.7
At4g14160.1 68417.m02184 transport protein, putative similar to ... 27 8.7
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP... 27 8.7
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 207 bits (506), Expect = 3e-54
Identities = 100/151 (66%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Frame = +1
Query: 34 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 213
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 214 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 387
FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
Query: 388 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKK 480
++PGLTD E PR GPKRASKIRKLFNLKK
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKK 151
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 204 bits (497), Expect = 3e-53
Identities = 98/151 (64%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 34 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 213
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 214 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 387
FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120
Query: 388 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKK 480
++PGLTD E PR GPKRASKIRKLFNL K
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGK 151
>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1155
Score = 28.7 bits (61), Expect = 2.1
Identities = 21/94 (22%), Positives = 43/94 (45%)
Frame = +1
Query: 73 KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 252
K E +++R+ +R AE+ +LLG + K LR G D+ + Q + +++
Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654
Query: 253 RLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 354
+ + G + Y D ++ +K D+ L+
Sbjct: 655 -MEIDSGKNLY---ADSDQPKKRSNDLATDSRLN 684
>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1004
Score = 27.9 bits (59), Expect = 3.7
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 148 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 315
DL G E L AG K+G + + +LT V +SKG + + P RD + R
Sbjct: 231 DLAGSERASQTLS-AGSRLKEGCHINRSLLTLGTVIRKLSKGKNGHIPYRDSKLTR 285
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 391 EIPGLTDGEVPRRLGPKRASKIRKLFNLKK 480
E+PGL D V L PK+ ++++KL K+
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKLRREKR 649
>At5g07820.1 68418.m00896 expressed protein
Length = 561
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 425 RGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 315
+ TSPSVSP + + K R++ P+ DL
Sbjct: 161 KSTSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDL 197
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 70 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 165
+KL+ EV DE KLR+ YE++ D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
(CHX20) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 842
Score = 27.1 bits (57), Expect = 6.5
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -3
Query: 199 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 26
Y+ G H R+L+DL Q R AC H P ++S I L R+T LR
Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487
>At2g43795.1 68415.m05444 hypothetical protein
Length = 170
Score = 27.1 bits (57), Expect = 6.5
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 283 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 462
YR + D ER K +G +++S RKG +E + E+PR KR S IRK
Sbjct: 54 YRAQLDAERAMKLSKGRNYSSDIS-------RKGRRESSQIESAEIPRGRKAKRES-IRK 105
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 55 PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 222
P CQ + V D + FYEK G E+ E+K Y + + G + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270
>At4g14160.3 68417.m02185 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 620
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 357 LSPGHCPQRCTG 392
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At4g14160.2 68417.m02186 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 772
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 357 LSPGHCPQRCTG 392
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At4g14160.1 68417.m02184 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 621
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 357 LSPGHCPQRCTG 392
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
identical to fatty acid multifunctional protein (AtMFP2)
GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
acid beta-oxidation); contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 725
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 295 RDGERKRKSVRGCIV--DANLSVLALVIVRKGAQEIPGLTD-GEVPRRL 432
R G K V +V D ++ + ++G ++PG+TD G VPR++
Sbjct: 264 RAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKI 312
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,087,894
Number of Sequences: 28952
Number of extensions: 204285
Number of successful extensions: 495
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -