Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N08
         (342 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3AEB8 Cluster: Putative uncharacterized protein; n=1; ...    30   8.8  
UniRef50_Q2L027 Cluster: Putative exported protein precursor; n=...    30   8.8  
UniRef50_Q8U3N7 Cluster: Putative uncharacterized protein PF0420...    30   8.8  

>UniRef50_Q3AEB8 Cluster: Putative uncharacterized protein; n=1;
           Carboxydothermus hydrogenoformans Z-2901|Rep: Putative
           uncharacterized protein - Carboxydothermus
           hydrogenoformans (strain Z-2901 / DSM 6008)
          Length = 275

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +1

Query: 100 IASNDTLANHFDSTMDAQFYLNKP 171
           +A+NDT++N+F + + + +Y+N P
Sbjct: 234 LAANDTISNYFGTLLPSNWYINNP 257


>UniRef50_Q2L027 Cluster: Putative exported protein precursor; n=1;
            Bordetella avium 197N|Rep: Putative exported protein
            precursor - Bordetella avium (strain 197N)
          Length = 1254

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 332  HSGLSAAVLREARSGGDSLQWNLNYVRHITKYNE 231
            H    AA LRE   G DSLQ+  ++ R  T YNE
Sbjct: 988  HWSRLAATLRERCLGRDSLQFQTDWRRFTTAYNE 1021


>UniRef50_Q8U3N7 Cluster: Putative uncharacterized protein PF0420;
           n=1; Pyrococcus furiosus|Rep: Putative uncharacterized
           protein PF0420 - Pyrococcus furiosus
          Length = 952

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 287 GDSLQWNLNYVRHITKYNEPQIRRVSRFRCEETSHMVYTGLFK 159
           GD++ WNL  V+ +T Y  PQ+    +F+   T   +  G+ +
Sbjct: 610 GDNISWNLTVVK-VTLYYPPQVYAGEKFKVNGTVEGIKEGIIE 651


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,830,072
Number of Sequences: 1657284
Number of extensions: 6491295
Number of successful extensions: 19522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19515
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10275329640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)