Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N08
         (342 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   0.66 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   0.87 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   2.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   6.1  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     20   8.1  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 284 PLPTSPPATPRQINPNAL 337
           PLP  P   P  INP+A+
Sbjct: 182 PLPLPPIFAPTMINPSAI 199


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 284 PLPTSPPATPRQINPNAL 337
           PLP  P   P  INP+A+
Sbjct: 182 PLPLPPIFPPTMINPSAI 199


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 217 ESLGFDVKKHLTWSIQVYLNRTEHP*SNQNDSLMC-RYLQC 98
           ESL    K   T  +Q  ++  EH  S+ N  ++C R L C
Sbjct: 106 ESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSC 146


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 5   EAKSETLPF 31
           EAK ETLPF
Sbjct: 348 EAKPETLPF 356


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 299 ARSGGDSLQWNLNY 258
           A  GGDS Q  LNY
Sbjct: 255 AAPGGDSQQAALNY 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,620
Number of Sequences: 336
Number of extensions: 1719
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6664455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)