Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N08
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    28   0.35 
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    27   1.1  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    24   5.6  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    24   5.6  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    24   5.6  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   7.5  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    23   9.8  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    23   9.8  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    23   9.8  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 0.35
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 8   AKSETLPFAICVMTISYSSLRESFYYSRKCALQVTTH 118
           AKSE  PF IC +T S    ++   Y R C   +  H
Sbjct: 647 AKSEESPFEICPVTYSIEQEKKLEKYKRVCLRGLDIH 683


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 147 CSVLFK*TCIDHVRCFFTSKPRDSPNL 227
           C VL + T I ++ C   ++P  SPNL
Sbjct: 322 CMVLTEGTDIPNIDCLMIARPTSSPNL 348


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 17  ETLPFAICVMTISYSSLRESFYYS 88
           + LPFA C +  SY S + S  Y+
Sbjct: 145 QDLPFAFCYLFSSYFSYKSSRQYT 168


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = -3

Query: 313 RCCGRRGREGTPCSGT*ITYDTSQ--STTSRR---FGESLGFDVKKHLTWSIQVYLNRTE 149
           +C GR GR G   +GT I    S+   T S R    G S     +  LT+++ + L R E
Sbjct: 683 QCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILNLLRVE 742


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 328 RVYLPRCCGRRGREGT 281
           +V  P+C GR G+EG+
Sbjct: 134 KVICPKCSGRGGKEGS 149


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = +2

Query: 260 NLGSTARSPLPTS------PPATPRQINPNALY 340
           N   TA SPLPT+      P   PR+++ N+ Y
Sbjct: 170 NANYTASSPLPTASANAPLPVPPPRRVSQNSSY 202


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 287 GDSLQWNLNYVRHITKYNEPQIRRVSRFRC 198
           GD L + LN +  I+K +  Q   V+  RC
Sbjct: 33  GDLLNYFLNLLEEISKLDTDQPLSVTSLRC 62


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 35  ICVMTISYSSLRESFYYSRKCALQV 109
           ICV   +Y ++  +F Y R+C   V
Sbjct: 105 ICVGYFTYLAMPATFLYGRRCVYLV 129


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 299 ARSGGDSLQWNLNYVRHITKYNEPQIRRVSRFRC-EETSHMVYT 171
           A +GG  +  ++N    ++K+NE Q   VS  R  EE S  +Y+
Sbjct: 219 ALAGGVDIILSVNGYVWVSKHNENQHSSVSITRLEEEASESIYS 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,153
Number of Sequences: 5004
Number of extensions: 28168
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)