Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N08
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0328 + 16833423-16833541,16833638-16833791,16834449-168344... 29 0.72
02_03_0349 + 18010414-18014283 29 0.95
08_02_1350 - 26312275-26313613,26314833-26315110 27 5.1
08_02_0983 - 23281787-23281931,23282045-23282163,23282765-232828... 27 5.1
08_01_0248 - 2048077-2048530,2049015-2049388 27 5.1
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944... 27 5.1
07_03_0332 + 16880184-16881017,16881334-16881462,16882685-168827... 26 6.7
03_06_0087 - 31551825-31553363 26 6.7
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308... 26 6.7
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 26 6.7
09_02_0254 - 6334767-6335465 26 8.9
01_06_0460 + 29545030-29546377,29546463-29547085 26 8.9
>07_03_0328 +
16833423-16833541,16833638-16833791,16834449-16834490,
16834964-16835104,16835471-16835728,16835857-16836492
Length = 449
Score = 29.5 bits (63), Expect = 0.72
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 332 HSGLSAAVLREARSGGDSLQWNLNYVRHITK 240
HS L +LR G ++QW NY R +TK
Sbjct: 400 HSKLPVRLLRSLERWGLAVQWRCNYKRTLTK 430
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 29.1 bits (62), Expect = 0.95
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 113 SLLAMHIYGCNKKIREGNCNLLSLHKWQKV 24
SL ++HIYGC+ ++++ C H W K+
Sbjct: 1252 SLTSLHIYGCSSELKK-RCQKHVGHDWVKI 1280
>08_02_1350 - 26312275-26313613,26314833-26315110
Length = 538
Score = 26.6 bits (56), Expect = 5.1
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -1
Query: 333 AFGFICRGVAGGEVGRGLLAVEPKLRTTHHKVQRAADSASL*VSM*RNISHG 178
A F G GG G G L L TTH + AA +A+ V +SHG
Sbjct: 36 AVSFPAGGGGGGRGGSGFLIHRALLLTTHGTIPSAAAAAAAEV----RLSHG 83
>08_02_0983 -
23281787-23281931,23282045-23282163,23282765-23282871,
23284392-23284470,23285054-23285143,23285259-23285531,
23285617-23285769,23285969-23286290,23286428-23286672
Length = 510
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 263 LGSTARSPLPTSPPATPRQINPNALY 340
L S AR PT PP+ R I P+AL+
Sbjct: 109 LVSQARLFKPTYPPSKERMIGPSALF 134
>08_01_0248 - 2048077-2048530,2049015-2049388
Length = 275
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 88 AVIKRFAKGTVTYCHYTNGKR*SFTFCLV 2
A + + AK V+YC+YT+ R + +C +
Sbjct: 103 ACLAQAAKQMVSYCNYTSDSRLWYEYCFM 131
>02_02_0363 +
9446055-9446524,9446658-9446771,9446856-9447281,
9447812-9447893,9447964-9448020,9448633-9448881,
9448978-9449109,9449163-9449291
Length = 552
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 269 STARSPLPTSPPATPRQINP 328
S+ SPLPT PP P Q P
Sbjct: 96 SSKSSPLPTPPPPPPTQPQP 115
>07_03_0332 +
16880184-16881017,16881334-16881462,16882685-16882750,
16883159-16883224,16884419-16884457,16884858-16885028
Length = 434
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 321 ICRGVAGGEVGRGLLAV 271
+ RG AGGEVGR + AV
Sbjct: 1 MARGAAGGEVGRSMPAV 17
>03_06_0087 - 31551825-31553363
Length = 512
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -1
Query: 333 AFGFICRGVAGGEVGRGLLAVE-PKLRT 253
AFGF+C+G+ G + + L + PKL T
Sbjct: 211 AFGFLCQGLLGRDPAKSALGRDGPKLIT 238
>03_02_0924 + 12429764-12430120,12430562-12430637,12430803-12430849,
12431850-12431962,12432056-12432129,12432258-12432353,
12432440-12432559,12432660-12432893,12433486-12433634,
12434145-12434301,12434387-12434542,12435359-12435735,
12435871-12436020,12437071-12437253,12437440-12437643,
12437869-12437975,12438253-12438406,12438796-12438917,
12439541-12439787
Length = 1040
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 107 LAMHIYGCNKKIRE 66
LA+H+YGCN I E
Sbjct: 998 LAIHVYGCNSDIAE 1011
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 254 VRNLGSTARSPLPTSPPATPRQINPNA 334
+R +GS + P PP+TP N +A
Sbjct: 2594 IRQIGSLRKKSTPEPPPSTPTTPNDSA 2620
>09_02_0254 - 6334767-6335465
Length = 232
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 218 AESAARCTL*CVVRNLGSTARSPLPTSPPATPRQINPNA 334
AE AAR V R G A++ P SPP P P A
Sbjct: 146 AEGAARAYDDEVRRIYGGNAKTNFPPSPPTPPPPEKPAA 184
>01_06_0460 + 29545030-29546377,29546463-29547085
Length = 656
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 248 CVVRNLGSTARSPLPTSPPATPRQI 322
C R G T R P P+ PP++P ++
Sbjct: 55 CSDRWRGITCRKPSPSPPPSSPPRV 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,828,668
Number of Sequences: 37544
Number of extensions: 186548
Number of successful extensions: 717
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -