Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N08
(342 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59807| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.75
SB_15142| Best HMM Match : rve (HMM E-Value=1.1e-13) 29 0.75
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) 29 1.3
SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 29 1.3
SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16) 29 1.3
SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12) 29 1.3
SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_14705| Best HMM Match : WD40 (HMM E-Value=3.6e-20) 28 1.7
SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 27 3.0
SB_50798| Best HMM Match : CBS (HMM E-Value=2.8) 27 3.0
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 27 3.0
SB_46740| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 27 3.0
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15) 27 3.0
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 27 3.0
SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14) 27 3.0
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15) 27 3.0
SB_15652| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08) 27 3.0
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 27 5.3
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07) 27 5.3
SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 27 5.3
SB_29040| Best HMM Match : Keratin_B2 (HMM E-Value=0.44) 26 7.0
SB_55727| Best HMM Match : Fringe (HMM E-Value=1.9e-35) 26 9.2
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_2847| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
>SB_59807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.5 bits (63), Expect = 0.75
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARS-PLPTSPPATP 313
RN S AR+ PLPT+PP+TP
Sbjct: 197 RNAASQARTLPLPTAPPSTP 216
>SB_15142| Best HMM Match : rve (HMM E-Value=1.1e-13)
Length = 442
Score = 29.5 bits (63), Expect = 0.75
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S AR+P LPT+PP+TP
Sbjct: 247 RNASSQARTPPLPTAPPSTP 266
>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1243
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S AR+P LPT+PP+TP
Sbjct: 1048 RNAPSQARTPPLPTAPPSTP 1067
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 269 STARSPLPTSPPATPRQINPNA 334
S +R+P P S P TPR I+P++
Sbjct: 233 SNSRNPTPFSNPTTPRPISPSS 254
>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
Length = 1590
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S AR+P LPT+PP+TP
Sbjct: 1196 RNAPSQARTPPLPTAPPSTP 1215
>SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S AR+P LPT+PP+TP
Sbjct: 854 RNAPSQARTPPLPTAPPSTP 873
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S AR+P LPT+PP+TP
Sbjct: 840 RNAPSQARTPPLPTAPPSTP 859
>SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 913
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S AR+P LPT+PP+TP
Sbjct: 530 RNAPSQARTPPLPTAPPSTP 549
>SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12)
Length = 1067
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S AR+P LPT+PP+TP
Sbjct: 59 RNAPSQARTPPLPTAPPSTP 78
>SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1552
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S AR+P LPT+PP+TP
Sbjct: 1179 RNAPSQARTPPLPTAPPSTP 1198
>SB_14705| Best HMM Match : WD40 (HMM E-Value=3.6e-20)
Length = 215
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 235 TSRRFGESLGFDVKKHLTWSIQVYLNRTEHP*SNQNDSLMCRY 107
T FG S + K WS +YL E + +NDS+M RY
Sbjct: 8 TEYNFGSSRSTNSPK--AWSSLMYLTERERGAAYKNDSVMARY 48
>SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 27.9 bits (59), Expect = 2.3
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = -3
Query: 340 IESIRVYLPRCCGRRGREGTPCSGT*ITYDTSQSTTSRRFGESLGFDVKKHLTWSIQVYL 161
+ S RV L RG P G +++DT S + S K+H W +++
Sbjct: 592 VTSSRVRLGCIIRSRGGCSAPYVGGDVSWDTYNSPDKNEWNPSDDCPKKEHKAWKVKLER 651
Query: 160 NRTEHP*SNQND 125
R E N ND
Sbjct: 652 GRVE---DNGND 660
>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 942
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 623 RNAPSQAATPPLPTSPPSTP 642
>SB_50798| Best HMM Match : CBS (HMM E-Value=2.8)
Length = 234
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 180 RNAPSQAATPPLPTSPPSTP 199
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 1164 RNAPSQAATPPLPTSPPSTP 1183
>SB_46740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 80 RNAPSQAATPPLPTSPPSTP 99
>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 131 RNAPSQAATPPLPTSPPSTP 150
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 642 RNAPSQAATPPLPTSPPSTP 661
>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 1485
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 1256 RNAPSQAATPPLPTSPPSTP 1275
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 797 RNAPSQAATPPLPTSPPSTP 816
>SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)
Length = 707
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 457 RNAPSQAATPPLPTSPPSTP 476
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 853 RNAPSQAATPPLPTSPPSTP 872
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 282 RNAPSQAATPPLPTSPPSTP 301
>SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 638
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 460 RNAPSQAATPPLPTSPPSTP 479
>SB_15652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 689
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A++P LPT+PP+TP
Sbjct: 475 RNAPSQAKTPPLPTAPPSTP 494
>SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08)
Length = 745
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 257 RNLGSTARSP-LPTSPPATP 313
RN S A +P LPTSPP+TP
Sbjct: 239 RNAPSQAATPPLPTSPPSTP 258
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 251 VVRNLGSTARSPLPTSPPATP 313
++ LGS AR P T PPA P
Sbjct: 29 LIEVLGSQARDPASTPPPAPP 49
>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
Length = 1253
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 260 NLGSTARSPLPTSPPATP 313
N G PLPT+PP+TP
Sbjct: 1079 NSGPGQNPPLPTAPPSTP 1096
>SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 320
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 251 VVRNLGSTARSPLPTSPPATP 313
++ LGS AR P T PPA P
Sbjct: 29 LIEVLGSQARDPASTPPPAPP 49
>SB_29040| Best HMM Match : Keratin_B2 (HMM E-Value=0.44)
Length = 319
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 112 RYLQCTFTAVIKRFAKGTVTYCHYT 38
RY+ C+ V++RF K T + C YT
Sbjct: 261 RYICCSGRVVLRRFGKNT-SCCRYT 284
>SB_55727| Best HMM Match : Fringe (HMM E-Value=1.9e-35)
Length = 200
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 28 FCHLCNDNKLQFPSRIFLLQ 87
FCH +DN + FP+ I LL+
Sbjct: 3 FCHFDDDNYVNFPALIKLLR 22
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 315 RGVAGGEVGRGLLAVEPKLRTTHHKVQRAAD 223
+ + VG GLLA PK R H V A+
Sbjct: 950 KSIEDASVGDGLLARMPKTRALRHSVIECAE 980
>SB_2847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 68 EGNCNLLSLHKWQKVEFHFLP 6
+ +CN++ LH+W K FLP
Sbjct: 386 DADCNVVLLHEWGKAFSCFLP 406
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,603,509
Number of Sequences: 59808
Number of extensions: 232846
Number of successful extensions: 692
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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