Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N08
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88167-7|AAB42229.1|  378|Caenorhabditis elegans Hypothetical pr...    28   1.5  
Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr...    28   2.0  
U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation f...    28   2.0  
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.     28   2.0  
AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial...    28   2.0  
AF089729-1|AAD04156.1|  458|Caenorhabditis elegans SMG-7 protein.      27   3.5  
AC024204-5|AAF36043.1|  458|Caenorhabditis elegans Suppressor wi...    27   3.5  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    26   6.1  

>U88167-7|AAB42229.1|  378|Caenorhabditis elegans Hypothetical
           protein D2092.2 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 272 TARSPLPTSPPATPRQINPNA 334
           TARSP+ TSP ++P+  +P A
Sbjct: 293 TARSPINTSPSSSPKASSPKA 313


>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical
           protein E03A3.6 protein.
          Length = 2089

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = -3

Query: 205 FDVKKHLTWSIQVYLNRTEHP*SNQNDSLMCRYLQCTFTAVIKRFAKGTVTYC 47
           F  K       Q+ L+  + P SN       RY Q T    +K F      YC
Sbjct: 9   FSAKIRTLSEFQIRLSTNQQPPSNAEIITTLRYFQQTLIGFLKDFPSTQTNYC 61


>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical
           protein E03A3.6 protein.
          Length = 2089

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = -3

Query: 205 FDVKKHLTWSIQVYLNRTEHP*SNQNDSLMCRYLQCTFTAVIKRFAKGTVTYC 47
           F  K       Q+ L+  + P SN       RY Q T    +K F      YC
Sbjct: 9   FSAKIRTLSEFQIRLSTNQQPPSNAEIITTLRYFQQTLIGFLKDFPSTQTNYC 61


>U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 2 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 327 GFICRGVAGGEVGRGLLAVEPKLRTTHHKVQ 235
           G +CRGV G  V RG+ A  P   T  ++V+
Sbjct: 305 GVLCRGVKGDTVKRGMWAGHPGAVTITNRVK 335


>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
          Length = 2084

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/53 (28%), Positives = 19/53 (35%)
 Frame = -3

Query: 205 FDVKKHLTWSIQVYLNRTEHP*SNQNDSLMCRYLQCTFTAVIKRFAKGTVTYC 47
           F  K       Q+ L+  + P SN       RY Q T    +K F      YC
Sbjct: 9   FSAKIRTLSEFQIRLSTNQQPPSNAEIITTLRYFQQTLIGFLKDFPSTQTNYC 61


>AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial
           elongation factorTu homologue protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 327 GFICRGVAGGEVGRGLLAVEPKLRTTHHKVQ 235
           G +CRGV G  V RG+ A  P   T  ++V+
Sbjct: 305 GVLCRGVKGDTVKRGMWAGHPGAVTITNRVK 335


>AF089729-1|AAD04156.1|  458|Caenorhabditis elegans SMG-7 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 208 GFDVKKHLTWSIQVYLNR 155
           G D+ K LTW+  V+LNR
Sbjct: 99  GNDISKQLTWTPDVFLNR 116


>AC024204-5|AAF36043.1|  458|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 7 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 208 GFDVKKHLTWSIQVYLNR 155
           G D+ K LTW+  V+LNR
Sbjct: 99  GNDISKQLTWTPDVFLNR 116


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 329 SGLSAAVLREARSGGDSLQWNLNYVRHITKYNEPQIRRVSRFRCEETSHM 180
           +G   A   E   G D L W L    H+ KY+E   RR S +  E +S++
Sbjct: 48  TGKVGAPDNEKSEGTDPLHWQLRKDFHLAKYSE---RRAS-YHVESSSYI 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,398,372
Number of Sequences: 27780
Number of extensions: 163862
Number of successful extensions: 466
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)