Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N08
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   3.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   9.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   9.5  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 337 ESIRVYLPRCCGR 299
           E+ ++ LP CCG+
Sbjct: 357 EAFKLMLPNCCGK 369


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 263 LGSTARSPLPTSPPATPRQINPNA 334
           LG +   P P  PP  P    P++
Sbjct: 332 LGDSDTPPKPAPPPPPPSSSGPDS 355


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -2

Query: 338 REHSGLSAAVLREARSGGDSLQWN--LNYVRHITKYNEPQIRRVSR 207
           RE S  S+  L   + GG   QW+  L  V    + NE ++    R
Sbjct: 368 REESNSSSPSLDLGKEGGLEAQWSRVLGRVHATIERNEKRLAEQDR 413


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 275 ARSPLPTSPPATPRQINPNAL 337
           ++ P P  PP  P   NP+ +
Sbjct: 43  SQGPPPGGPPGAPPSQNPSQM 63


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 266 GSTARSPLPTSPPATPRQINPNAL 337
           G  + SP P+SP +    ++P +L
Sbjct: 85  GGGSSSPSPSSPSSFFSSVSPTSL 108


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 336 RAFGFICRGVA 304
           R FG++C G+A
Sbjct: 198 RLFGYLCPGMA 208


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 65  LRESFYYSRKCALQVTTH 118
           L+E FY   +C+L + T+
Sbjct: 144 LKEMFYLIIECSLNLETY 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,146
Number of Sequences: 438
Number of extensions: 1733
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)