Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N08
(342 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24450.1 68416.m03068 copper-binding family protein similar t... 27 2.5
At1g45403.1 68414.m05196 membrane protein 26 5.7
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 26 7.6
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 26 7.6
At5g51770.1 68418.m06419 protein kinase family protein contains ... 26 7.6
At3g62910.1 68416.m07067 peptide chain release factor, putative ... 25 10.0
At3g61780.1 68416.m06931 expressed protein ; expression supporte... 25 10.0
At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein ... 25 10.0
At1g55220.1 68414.m06307 hypothetical protein 25 10.0
At1g01840.1 68414.m00103 expressed protein 25 10.0
>At3g24450.1 68416.m03068 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 140
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 107 LAMHIYGCNKKIREGNCNLLSLHKWQKVE 21
++MH YGC KK+ E + + L W KVE
Sbjct: 80 VSMHCYGCAKKV-EKHISKLDGVTWYKVE 107
>At1g45403.1 68414.m05196 membrane protein
Length = 169
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 282 LLAVEPKLRTTHHKVQRAADSASL*VSM*RNISHGLYRFI 163
+L + L THHK+ AD +SL V + + G+ F+
Sbjct: 41 ILNIAANLYMTHHKIPLTADESSLTVCLLMYLVCGMMSFM 80
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 266 GSTARSPLPTSPPATPRQINPNALY 340
GS + PLP SPP +P++L+
Sbjct: 198 GSNGQPPLPVSPPPPLPSSHPSSLF 222
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 266 GSTARSPLPTSPPATPRQINPNALY 340
GS + PLP SPP +P++L+
Sbjct: 198 GSNGQPPLPVSPPPPLPSSHPSSLF 222
>At5g51770.1 68418.m06419 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 654
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 221 ESAARCTL*CVVRNLGSTARSPLPTSPPATPRQI 322
ES T C N G T +SP+P S P Q+
Sbjct: 269 ESVVTNTTGCDESNFGFTDQSPVPLSSPEMVEQV 302
>At3g62910.1 68416.m07067 peptide chain release factor, putative
similar to peptide chain release factor 1 [Escherichia
coli] GI:147567; contains Pfam profiles PF00472:
Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain
Length = 422
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -2
Query: 299 ARSGGDSLQ-WNLNYVRHITKYNEPQIRRVSRFRCEETSHMVY 174
A +GGD W + VR +Y+E + S C E H Y
Sbjct: 173 AGTGGDEAAIWTGDLVRMYQRYSERSSWKFSMVSCSEAEHGGY 215
>At3g61780.1 68416.m06931 expressed protein ; expression supported
by MPSS
Length = 1121
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 104 AMHIYGCNKKIREGNCNLLSLHKW 33
AM + G KK+ + N L LH+W
Sbjct: 718 AMFLQGLEKKVEKENEKLSHLHQW 741
>At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 521
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 332 HSGLSAAVLREARSGGDSLQWNLNYVRHITKYNEPQI 222
H G++ + AR SL NLN+ R ++EP++
Sbjct: 336 HVGIAKEQPQPARFPSSSLPMNLNFHRPPNVFSEPKV 372
>At1g55220.1 68414.m06307 hypothetical protein
Length = 164
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 125 FANVSLLAMH--IYGCNKKIREGNCNLLSLHKWQKVEFHF 12
F+N + M GC+K++ G C++ +H+ Q+ +HF
Sbjct: 91 FSNSGTMVMKKKYLGCDKRV--GCCSMNDIHQLQRNLYHF 128
>At1g01840.1 68414.m00103 expressed protein
Length = 152
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = -3
Query: 340 IESIRVYLPRCCGRRGREGTPCSGT*ITYDTSQSTTSRRFGESLGFDVKKHLT 182
IE + + C R R P S + +TS T R G GFD H T
Sbjct: 89 IEKVEEKMRECFIRNKRLKRPLSPSSAVVETS--ATEERSGRDYGFDSDPHAT 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,826,605
Number of Sequences: 28952
Number of extensions: 148282
Number of successful extensions: 406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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