Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N07
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741...    28   3.7  
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    28   3.7  
07_03_0874 - 22202699-22203070,22204239-22204874                       28   5.0  
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447...    27   6.5  
01_01_0822 - 6401993-6402133,6402542-6402708,6402865-6402966,640...    27   8.7  

>04_03_0618 -
           18071612-18072795,18073007-18073072,18074101-18074175,
           18074234-18074963
          Length = 684

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -1

Query: 157 SRSDFSLKTILDKPSFILSVSIKSITFFSYLSNVSHPVLTKGIRS 23
           S++D S++T+       L V+ +S   FSYL ++ HP+L   ++S
Sbjct: 452 SQNDPSIRTL----EIRLKVAAESAEAFSYLHSLDHPILHGDVKS 492


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 369 VLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSST 494
           V+  GDK   +ES    +T+ LPS  C D V   +     ST
Sbjct: 198 VIECGDKVAQQESSTQESTVSLPSSECGDKVAQQESSTQEST 239


>07_03_0874 - 22202699-22203070,22204239-22204874
          Length = 335

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 418 LSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSG 311
           ++A+  L L L+PS  TD  S P + A+ P + SSG
Sbjct: 5   VAAALLLALLLAPSAATDVPSYPLSQAQSPANTSSG 40


>11_08_0023 +
           27741775-27742475,27744163-27744413,27744557-27744715,
           27744976-27745409,27745537-27746076
          Length = 694

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 155 QKRLFTQNNIGQT-KFYFECIHKVDNVLFIFVECITSSFDKRHTL 24
           +++++ Q+ +  T   Y  C+  +D +  + V C+ +  DKR T+
Sbjct: 631 RRKMYDQDMLSSTDSLYPYCMECLDRMAAVAVRCLKNKVDKRPTM 675


>01_01_0822 -
           6401993-6402133,6402542-6402708,6402865-6402966,
           6403437-6403577,6403685-6403768,6403858-6404164,
           6404286-6404357
          Length = 337

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +3

Query: 294 SIVTVTPELKC--GGNLAH----VVGFDESSVLMLGDKKRTKESEALRATLELPSDSC 449
           SI+T +PE     GGN+      ++  D S+  + G K    + E L    E PSDSC
Sbjct: 120 SILTKSPESDSSEGGNIEVNEQCMLPVDTSAAEISGGKSIDVDEEVLSGNSEKPSDSC 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,599,922
Number of Sequences: 37544
Number of extensions: 223942
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)