Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N07
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)                   29   2.2  
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)                       27   6.7  
SB_2744| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
          Length = 1197

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 481 TRPSTV*TKSMQESDGSSNVALSASDSLVLFLSPSIRTDDSSNPTTCARFPP 326
           T P  +  KS+   +  S V LS  DSL +  +P+ +TD   +P+     PP
Sbjct: 811 TEPIYINRKSLSSPEPESAVELSRPDSLTM-EAPTTKTDRPLSPSAPPPLPP 861


>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -3

Query: 227 ELIDARLRHCQENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIF 66
           E  ++ +R CQ N      A W   +RL +Q +I   K     I +++  L  F
Sbjct: 9   ETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMNDIKRLEAALIPF 62


>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
          Length = 125

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -3

Query: 227 ELIDARLRHCQENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIF 66
           E  ++ +R CQ N      A W   +RL +Q +I   K     I +++  L  F
Sbjct: 41  ETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMNDIKRLEAALIPF 94


>SB_2744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 127 LDKPSFILSVSIKSITFFSYLSNVSHPVLTKGI 29
           LDK  + L+V++ ++    Y  NV+ P L KG+
Sbjct: 88  LDKGKYALNVTVPTLDKGKYALNVTVPTLDKGM 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,189
Number of Sequences: 59808
Number of extensions: 274877
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)