Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N07
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    27   5.9  

>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 457 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 338
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 457 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 338
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical
           protein T06C12.13 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 360 ESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 473
           E SV M G++  TK   A+     +  DSCID+ +  D
Sbjct: 248 EMSVKMFGNQVLTKRKFAISNEKLMVMDSCIDYSEITD 285


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 205 DTVKRTCLTAPARNGRSRSDFSLKTILDKPSFILSVSIKSI 83
           D  +  C+   AR    R +F +    D PSF +S+ +KSI
Sbjct: 166 DYYENNCVHPTARCPNGRIEFVVTRKADVPSFGISLGVKSI 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,959,966
Number of Sequences: 27780
Number of extensions: 202642
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)