Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N07
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17220.1 68417.m02590 expressed protein                             30   0.78 
At3g25840.1 68416.m03219 protein kinase family protein contains ...    28   4.2  
At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 fam...    27   5.5  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   7.3  
At5g03490.1 68418.m00305 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.6  
At3g21560.1 68416.m02719 UDP-glucosyltransferase, putative simil...    27   9.6  
At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein s...    27   9.6  
At1g21650.1 68414.m02710 preprotein translocase secA family prot...    27   9.6  

>At4g17220.1 68417.m02590 expressed protein
          Length = 513

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 267 LLENLGMSMSIVTVTPELKCGGNLAHVVGFDESSVLMLGDKKRTKESEALR 419
           +LE   +S SIV +   +  GG  A+ V      +  L D+KRT E E  R
Sbjct: 199 VLEIEKLSQSIVELEEAILAGGTAANAVRDYRRQISQLNDEKRTLERELAR 249


>At3g25840.1 68416.m03219 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 353 SDDMRKVSTALELRCHRHY*HRHTQIFQQRFEYNTANKFE*DELID 216
           SDD  K S   + R H+H+ HRH     ++ E    +  +  E++D
Sbjct: 21  SDDTEKASKRHKHRHHKHHHHRHRHHRDKKRENEIPSAGDETEILD 66


>At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 747

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   TRDKERYERMPFVKTGCDTFDKYEKNVI 86
           +RD E ++ M    TG D F+KYE  ++
Sbjct: 68  SRDLENHDIMVHATTGDDGFEKYETTIL 95


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
            protein [Arabidopsis thaliana] GI:21743571; contains Pfam
            profile PF00730: HhH-GPD superfamily base excision DNA
            repair protein
          Length = 1729

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 312  PELKCGGNLAHVVGFDESSVLMLGDKKRTKESEALRATLELP 437
            PE KCGG  +  + FDE+      +  R   S+ +R TL +P
Sbjct: 1585 PEQKCGGKASGKMCFDETCSEC--NSLREANSQTVRGTLLIP 1624


>At5g03490.1 68418.m00305 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 465

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 427 NVALSASDSLVLFLSPSIRTDDSSNPTTCARFPPH--LSSGVTVTIDI 290
           NV++  +   + +LSP +    SS  +    FPPH  LS GV    D+
Sbjct: 47  NVSVIVTPGNLTYLSPLLSAHPSSVTSVVFPFPPHPSLSPGVENVKDV 94


>At3g21560.1 68416.m02719 UDP-glucosyltransferase, putative similar
           to UDP-glucose:sinapate glucosyltransferase GI:9794913
           from [Brassica napus]
          Length = 496

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 54  DTFDKYEKNVIDFMDTLKI 110
           DTF+  EK++ID M TL +
Sbjct: 225 DTFNSLEKDIIDHMSTLSL 243


>At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein
           similar to GI:5579331 from [Homo sapiens]; contains Pfam
           profile PF01532: Glycosyl hydrolase family 47
          Length = 624

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  ERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIV 134
           E MP  + G D        V+D +DT  I +GL NIV
Sbjct: 152 ELMPISQKGVDGLGGLGATVVDALDTAMI-MGLDNIV 187


>At1g21650.1 68414.m02710 preprotein translocase secA family protein
           contains Pfam profiles: PF01043 SecA protein, amino
           terminal region, PF00400 WD domain, G-beta repeat,
           PF00097 zinc finger, C3HC4 type (RING finger)
          Length = 1579

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 39  VKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSLLDLPFRA 173
           +   C  FD+YE   +D ++ ++    +  I+  E S L  P  A
Sbjct: 260 LSVSCVKFDEYENAYVDLIELIETGRNVYRIIAEETSSLRKPVGA 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,317,660
Number of Sequences: 28952
Number of extensions: 188673
Number of successful extensions: 548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)