Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N06
         (464 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.4  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   1.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   2.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   3.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   3.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   4.3  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   4.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.6  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   7.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   9.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +3

Query: 69  FTKEGAQVAIVGRNVTKLEKVAGECTA 149
           FT E  QV        KLEKV GEC A
Sbjct: 706 FTMECPQVTCPDN--MKLEKVPGECCA 730


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -2

Query: 238 PKASIVLLTIVLTSSWLDKSALMINGFLPLAVHSPA 131
           P A IVL       +W       ING  PL +  PA
Sbjct: 289 PSAKIVLGLPTFGRAWAMDDESDINGTPPLHISGPA 324


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 152 ISSAFSSDFFKFC 114
           ISS F S FFK C
Sbjct: 356 ISSKFRSGFFKLC 368



 Score = 20.2 bits (40), Expect = 9.8
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = -2

Query: 286 LPCFIIPALFTRISIFPKASIVLLTIVLTSSWLDKSALM 170
           LPC           IFP A ++++ I++  + +     M
Sbjct: 233 LPCVFFLGSILIFFIFPLAILIIVYILIAKTLMHHPVAM 271


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 211 IVLTSSWLDKSALMINGFLPL 149
           ++L  SWLD   L    FLPL
Sbjct: 230 LLLEESWLDLFVLGAAQFLPL 250


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 211 IVLTSSWLDKSALMINGFLPL 149
           ++L  SWLD   L    FLPL
Sbjct: 230 LLLEESWLDLFVLGAAQFLPL 250


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 422 CSYAKQYCANGLLH 463
           CSYA +YC +  +H
Sbjct: 292 CSYATKYCHSLKIH 305


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 422 CSYAKQYCANGLLH 463
           CSYA +YC +  +H
Sbjct: 50  CSYATKYCHSLKIH 63


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 129 VAGECTANGKKPLIIKADLSNQDEVSTIVSKTIDA 233
           VAG     GKKP  +K +  + +E  T   K  D+
Sbjct: 66  VAGGVQQAGKKPENVKKEDESDEEKPTTSFKLKDS 100


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 175  LMINGFLPLAVHSPATFSSFVT 110
            LM+  F  + +H   TFS  +T
Sbjct: 1294 LMVIQFFAMMIHRFGTFSQIIT 1315


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 175  LMINGFLPLAVHSPATFSSFVT 110
            LM+  F  + +H   TFS  +T
Sbjct: 1294 LMVIQFFAMMIHRFGTFSQIIT 1315


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 318 RMLPEGSLQVDYPA 277
           RM+ EGS+ V Y A
Sbjct: 491 RMMKEGSMMVTYQA 504


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 138 ECTANGKKPLIIKADLSNQ 194
           +C A G+KP+ I  +++N+
Sbjct: 817 QCEAKGEKPIGILWNINNK 835


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 434  KQYCANGL 457
            KQYCA GL
Sbjct: 1128 KQYCAGGL 1135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,809
Number of Sequences: 336
Number of extensions: 1742
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10721526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)