Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N06
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 54 1e-08
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 51 1e-07
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 51 1e-07
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 51 1e-07
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 48 5e-07
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 44 9e-06
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 44 1e-05
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 42 6e-05
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 41 8e-05
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 38 0.001
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 33 0.016
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 27 1.9
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 1.9
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 3.3
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 25 5.7
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 25 5.7
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 7.5
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 25 7.5
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.9
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 24 9.9
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 53.6 bits (123), Expect = 1e-08
Identities = 33/155 (21%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Frame = +3
Query: 9 GKVALVXXXXXXXXXXXXXQFTKEG-AQVAIVGRNVTKLEKVAGECTANGKKPLI-IKAD 182
GK L+ + K ++ + R + +E++A E + + ++ +K D
Sbjct: 6 GKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFSTVEEIAKELESKYEVSVLPLKLD 65
Query: 183 LSNQDEVSTIVSKTIDAFGKIDILVNNAGM-IKQGSLLEGNLLEAYDTVMATNLRAVIQL 359
+S+ + ++ F ID+L+NNAG+ + +++ N+ +A T++ TN+ ++ +
Sbjct: 66 VSDLKSIPGVIESLPKEFADIDVLINNAGLALGTDKVIDLNIDDAV-TMITTNVLGMMAM 124
Query: 360 TNLATPHIVEAN-GNIINISSTVATQNSTALTAYC 461
T P N G+I+N+ S ++ + YC
Sbjct: 125 TRAVLPIFYSKNKGDILNVGSIAGRESYVGGSVYC 159
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 50.8 bits (116), Expect = 1e-07
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 165 LIIKADLSNQDEVSTIVSKTIDAFGKIDILVNNAGMIKQGSLLEGNLLEAYDTVMATNLR 344
L+ + D++N + V K I FG+ID+L+NNAG S LE E + TN+
Sbjct: 17 LVTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAG-YSVYSPLESTTEEQIHNIFNTNVF 75
Query: 345 AVIQLTNLATPHI-VEANGNIINISS 419
+++ TP + NG IIN+SS
Sbjct: 76 GALEVIKAITPIFRSQHNGMIINVSS 101
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 50.8 bits (116), Expect = 1e-07
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Frame = +3
Query: 9 GKVALVXXXXXXXXXXXXXQFTKEGAQVAIVGRNVTKLEKVAGECTANGKKPLIIKADLS 188
G+V L+ FT+ G +VA G ++ KV A ++AD+S
Sbjct: 5 GRVVLITGAAGGIGKVLCKMFTELGDRVA--GIDIVDPSKVQDAALA-------LQADVS 55
Query: 189 NQDEVSTIVSKTIDAFGKIDILVNNAGMIKQGSLLEGNLLEAYDTVMATNLRAVIQLTNL 368
D++ T + K I G ID+L+NNAG + + E E++D ++ LR
Sbjct: 56 KADQIETAIEKVIQTLGPIDVLINNAG-LADDTPFEQLSHESWDHDVSLVLRGNYLTQRY 114
Query: 369 ATPHIVE--ANGNIINISS 419
PH+ + G+I+NI S
Sbjct: 115 VIPHMAKQGKGGSIVNIGS 133
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 50.8 bits (116), Expect = 1e-07
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 165 LIIKADLSNQDEVSTIVSKTIDAFGKIDILVNNAGMIKQGSLLEGNLLEAYDTVMATNLR 344
L+ + D++N + V K I FG+ID+L+NNAG S LE E + TN+
Sbjct: 17 LVTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAG-YSVYSPLESTTEEQIHNIFNTNVF 75
Query: 345 AVIQLTNLATPHI-VEANGNIINISS 419
+++ TP + NG IIN+SS
Sbjct: 76 GALEVIKAITPIFRSQHNGMIINVSS 101
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 48.4 bits (110), Expect = 5e-07
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 TRGKVALVXXXXXXXXXXXXXQFTKEGAQVAIVGRNVT-KLEKVAGECTANGKKPLIIKA 179
T KV L+ K+ A+V V R++T +LE + + N + +K
Sbjct: 4 TAEKVILLTGSSKGIGLATAEALQKK-AKVIAVSRSLTPELETLLIQ---NPDSFVHVKG 59
Query: 180 DLSNQDEVSTIVSKTIDAFGKIDILVNNAGMIKQGSLLEGNLLEAYDTVMATNLRAVIQL 359
D++ + S + I FGK+D ++ NAG+++ + + + + + N +V++
Sbjct: 60 DVTEVGKAS--IETAIKKFGKLDSVILNAGVLEPIAKIADADINEWRKLFDINFFSVVET 117
Query: 360 TNLATPHIVEANGNIINISSTVATQNSTALTAYC 461
A PH+ + G I+ +SS A + A AYC
Sbjct: 118 VKYAIPHLRKTKGTIVIVSSGAAVRVFPAWAAYC 151
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 44.4 bits (100), Expect = 9e-06
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
Frame = +3
Query: 9 GKVALVXXXXXXXXXXXXXQFTKEGAQVAIVGRNVTKLEKVAGEC--TANGKKPLIIKAD 182
GKVALV + ++GA+V + GRN K +KV + K ++ D
Sbjct: 42 GKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLRLD 101
Query: 183 LSNQDEVSTIVSKTIDAFGKIDILVNNAGMIKQGSLLEGNLLEAYDTVMATNLRAVIQLT 362
L + + V I K+ ILVNNAG++ L + Y+ + TN + T
Sbjct: 102 LLDFESVYQAAESFIAKEEKLHILVNNAGIMNPPFEL---TKDGYELQIQTNYLSHYLFT 158
Query: 363 NLATP 377
L P
Sbjct: 159 ELLLP 163
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 44.0 bits (99), Expect = 1e-05
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Frame = +3
Query: 102 GRNVTKLEKVAGECTANGKKPLIIKADLSNQDEVSTIVSKTIDAFGKIDILVNNAGMIKQ 281
G NV + T K L +K D+++ V T FG +DI++NNAG
Sbjct: 29 GYNVIACSRAPDTITIEHSKLLKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNAGYGLV 88
Query: 282 GSLLEGNLLEAYDTVMATNLRAVIQLTNLATPHIVEA--NGNIINISSTVATQNSTALTA 455
G N+ E + M N V +T A + E+ G I+ ISS S L+
Sbjct: 89 GEFESYNIEEMH-RQMNVNFWGVAYITKEALNLMRESGKGGRILQISSVAGYYPSPCLSM 147
Query: 456 Y 458
Y
Sbjct: 148 Y 148
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 158 EAVNHQSRFIQPRRSEHNSQ*NYRRLWEN*YSCEQRRNDKA 280
E + ++ +P + N + ++R WEN + CE+ +KA
Sbjct: 185 EWASSNMQWAKPHPAYENDR-SWRPFWENYHGCEETDPNKA 224
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 41.5 bits (93), Expect = 6e-05
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 3/155 (1%)
Frame = +3
Query: 6 RGKVALVXXXXXXXXXXXXXQFTKEGAQVAIVGRNVTKLEKVAGECTANGKKPLIIKADL 185
+GK +V F + G V I EK G + +K D+
Sbjct: 20 KGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKKLAEETGVQVHTLKIDI 79
Query: 186 SNQDEVSTIVSKTIDAFGKIDILVNNAGMIKQGSLLEGNLLEAYDTVMATNLRAVIQLT- 362
S D V V + F +I ++V NAGM + S+L+ E ++ VM N +V ++
Sbjct: 80 SRSDTVEAGVEEIQKIFKEIHVVVANAGMPFRRSVLDSPPHE-FEKVMNINTNSVYRVAY 138
Query: 363 NLATPHIVEANGNIINISSTVAT--QNSTALTAYC 461
+ + GN+I +S AT + AYC
Sbjct: 139 YMGKIFKKQGFGNLIATASMSATIVNAPQHIAAYC 173
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 41.1 bits (92), Expect = 8e-05
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 2/140 (1%)
Frame = +3
Query: 6 RGKVALVXXXXXXXXXXXXXQFTKEGAQVAIVGRNVTKLEKVAGECT-ANGKKPLIIKAD 182
+GK A+V F + GA IV N T EK A E ANG K K D
Sbjct: 20 KGKNAVVFGGARGIGHAICSVFAEAGANAFIV-YNTTPGEKAAKEIAQANGVKTYTCKCD 78
Query: 183 LSNQDEVSTIVSKTIDAFGKIDILVNNAGMIKQGSLLEGNLLEAYDTVMATNLRAVIQLT 362
++ EV ++ F IDI+V N G+ S ++ E + + NL V +
Sbjct: 79 VTIPKEVEHAFAEIQKVFDTIDIVVPNNGICTGKSAID-MTYEEFANEINVNLLGVFNVA 137
Query: 363 NLATPHI-VEANGNIINISS 419
+ A P + +G+++ +S
Sbjct: 138 HNAGPIFQKQGHGSLVATAS 157
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 37.5 bits (83), Expect = 0.001
Identities = 24/89 (26%), Positives = 40/89 (44%)
Frame = +3
Query: 153 GKKPLIIKADLSNQDEVSTIVSKTIDAFGKIDILVNNAGMIKQGSLLEGNLLEAYDTVMA 332
G+ I + L D +V + G ID+LVNN + +E E +D
Sbjct: 92 GRNCWIWEGKLDKSDNCRDLVDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFK 151
Query: 333 TNLRAVIQLTNLATPHIVEANGNIINISS 419
TN+ + +T A H +++ +I+N SS
Sbjct: 152 TNIFSFFWVTKAAISH-MKSGSSIVNCSS 179
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 33.5 bits (73), Expect = 0.016
Identities = 19/86 (22%), Positives = 41/86 (47%)
Frame = +3
Query: 168 IIKADLSNQDEVSTIVSKTIDAFGKIDILVNNAGMIKQGSLLEGNLLEAYDTVMATNLRA 347
IIK D+S+ + + + A GK+D+L N+G+ + + + +++ TN+
Sbjct: 58 IIKLDISSLESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNSHYKTNVLG 117
Query: 348 VIQLTNLATPHIVEANGNIINISSTV 425
I + P + + II +S++
Sbjct: 118 PIHVYQAFYPLVKKGESKIIVFTSSL 143
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -1
Query: 356 LYNSPQISRHDSVVCFQKVPFK*TTLLYHSCVVHKNINFPKGVYSFTD 213
+YN+ I+ + PF TT +C+ + N P G Y+ TD
Sbjct: 35 IYNASNITEVSNSTTVPPPPFVNTTAPNGTCLGNYNEYLPSGYYNATD 82
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 372 TPHIVEANGNIINISSTVATQNSTALTAY 458
+P +VEAN N + T+ +QN +A T Y
Sbjct: 523 SPSLVEANLNPDKLIKTIFSQNPSAYTLY 551
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -2
Query: 247 SIFPKASIVLLTIVLTSSWLDKSALMINGFLPLAVHSPA 131
++FP+ +L+ ++LT W K++++I LA+ +PA
Sbjct: 1552 NVFPEVVDLLVRLILTEDWETKASIVI-FVKKLALANPA 1589
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 358 NCITARKLVAMTVSYASRRFPSSRLPCFIIPAL 260
+C + R++V MT+ YA++ L I+P L
Sbjct: 1125 SCQSTREVVKMTIPYAAKLLFQELLSMNIVPRL 1157
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 5.7
Identities = 17/87 (19%), Positives = 37/87 (42%)
Frame = +3
Query: 168 IIKADLSNQDEVSTIVSKTIDAFGKIDILVNNAGMIKQGSLLEGNLLEAYDTVMATNLRA 347
IIK D+S+ + + + +D+L N+ + + + +++ TN+
Sbjct: 58 IIKLDVSSLESANEAAQEVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNSHYKTNVLG 117
Query: 348 VIQLTNLATPHIVEANGNIINISSTVA 428
I + P I + II +S++A
Sbjct: 118 PIHVYQAFYPLIKKGRSKIIVFTSSLA 144
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 24.6 bits (51), Expect = 7.5
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 69 FTKEGAQVAI--VGRNVTKLEKVAGECTANGKKPLIIKADLSNQDE 200
F KE ++ + V R V EK++G+ + K I+ DL ++DE
Sbjct: 1263 FCKEVNKLVLSEVVRQVRVTEKISGQGSDEQSKTYAIRLDLYSRDE 1308
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 156 KKPLIIKADLSNQDEVSTIVSKT 224
KK L+ D+++ D+V T SKT
Sbjct: 125 KKELVFDIDMTDYDDVRTCCSKT 147
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 24.6 bits (51), Expect = 7.5
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 333 TNLRAVIQLTNLATPHIVEANGNIINISSTVATQNSTALTAY 458
TNL+ V+ ++ + N I +SST T+N L+ +
Sbjct: 97 TNLQVVVDTKAQLNVNVNDGKPNDIELSSTSKTENDPPLSLH 138
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 24.2 bits (50), Expect = 9.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 340 KLVAMTVSYASRRFPSSRLPCFIIPALFTRISIFPKASIVLLTI 209
KL +T SY S R P +P +I + + + S LTI
Sbjct: 849 KLHQVTCSYISIRIPHKFIPFILIESAINTVKAAIRVSAEPLTI 892
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 180 DLSNQDEVSTIVSKTIDAFGKIDILVNNAG 269
DLSN V V F K+D + NAG
Sbjct: 75 DLSNMASVEAAVQDIATRFPKLDFVYLNAG 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,880
Number of Sequences: 5004
Number of extensions: 29456
Number of successful extensions: 116
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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