Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N06
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    39   2e-05
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.7  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   8.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 39.1 bits (87), Expect = 2e-05
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = +3

Query: 12  KVALVXXXXXXXXXXXXXQFTKEGAQVAIVGRNVTKLEKVAGECTANGKKPLIIKADLSN 191
           +VALV                 +G +V  +   V K++ +  E  +   K + ++ DLSN
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSN 67

Query: 192 QDEVSTIVSKTIDAFGKIDILVNNA 266
           Q+++  ++       G IDIL+NNA
Sbjct: 68  QNDILKVIEWVEKNLGAIDILINNA 92


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 240 KIDILVNN-AGMIKQGSLLEGNLLEAYDTV 326
           K+  L++N    +K+G  +  N+L+ Y++V
Sbjct: 896 KLPTLISNYIEAVKEGKFMNVNMLDTYESV 925


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 229 SIVLLTIVLTSSWLDKSA 176
           +IVL+T+ L + WL+ S+
Sbjct: 254 TIVLMTMTLMTLWLEPSS 271


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 419 HCSYAKQYCANGLLH 463
           +C+YA +YC +  LH
Sbjct: 49  NCTYATKYCHSLKLH 63


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +3

Query: 87  QVAIVGRNVTKLEKVAGECTANGKKPLIIKADLSNQ 194
           ++ +  +   + E    +C A G+KP+ I  +++N+
Sbjct: 780 EIKLKNQTARRGEPAVLQCEAQGEKPIGILWNMNNK 815


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 225 IDAFGKIDILVNNAGMIKQGSLLEGN 302
           ID +GK   +    G+   G+++EGN
Sbjct: 346 IDEYGKKIDIYTPEGLNMLGNVIEGN 371


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 5   EGQSCSCNR 31
           EG  CSCN+
Sbjct: 81  EGMQCSCNK 89


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 148 AVHSPATFSSFVTFLP 101
           A HSP  + S   FLP
Sbjct: 298 ACHSPGVYPSTAGFLP 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,188
Number of Sequences: 438
Number of extensions: 1804
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)