Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N05
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   0.22 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.67 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   2.7  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   2.7  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    24   4.7  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    24   4.7  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    23   8.3  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    23   8.3  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    23   8.3  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 19  APALKP*PERIGTQLIPP-PCLRRATHVKARAAEERLPAGPIAPVAPTVP 165
           AP +   P+R    ++P  P + +   V        +P  P+APVAP VP
Sbjct: 538 APEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVP 587



 Score = 24.6 bits (51), Expect = 2.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 124 LPAGPIAPVAPTVP 165
           +P  P+APVAP VP
Sbjct: 604 VPQPPVAPVAPEVP 617


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 0.67
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 127 PAGPIAPVAPTVPVGMGNHPEASHAA 204
           P  P AP+AP +P GM   P    AA
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAA 473


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 208 PWQHGLPPD 182
           PWQH LPPD
Sbjct: 831 PWQHLLPPD 839


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 155 QLCLWGWETIRRQAMLPRRR*KVEYNNLI**NTN 256
           Q+CL   +TIR   ++P+++  V+ NN+I  NT+
Sbjct: 668 QVCLAEIKTIR-PGLVPKKQFSVDQNNVISDNTD 700


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 161 CLWGWETIRRQAMLP 205
           C W W+T +  A LP
Sbjct: 511 CFWDWKTCKLMAKLP 525


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 202 QHGLPPDGFPS 170
           +HG+ PDGFP+
Sbjct: 27  EHGIGPDGFPT 37


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 112 AEERLPAGPIAPVAPTVPVGMGNH 183
           A  + P+G   P A   P G+GNH
Sbjct: 376 ASVKQPSGFSPPSAVAPPPGLGNH 399


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = -2

Query: 277 FFFFLRLISVLLNQIIIFYFLAPP 206
           F  +  ++ +L + +++FY   PP
Sbjct: 263 FLLYTGILKILKDDLLVFYTFIPP 286


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 14/57 (24%), Positives = 21/57 (36%)
 Frame = +2

Query: 35  PSLNGSVPSLFLRHACAVRLM*RHVRRRNGCLRGQLHLWPQLCLWGWETIRRQAMLP 205
           P+ N S+P +       +    ++V     CL       P LC   + T RR    P
Sbjct: 439 PARNDSIPMMVYSQPVTIEQRIQYVLSNCHCLSAFYLCMPSLCQKSYGTERRYLCPP 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 993,685
Number of Sequences: 5004
Number of extensions: 16375
Number of successful extensions: 54
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)