Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N05
(281 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11135| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 27 1.8
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_47682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_34024| Best HMM Match : VLPT (HMM E-Value=3.7) 26 4.1
SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 26 4.1
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.1
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.1
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 25 9.4
SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9) 25 9.4
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30) 25 9.4
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0) 25 9.4
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38) 25 9.4
>SB_11135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 204 GSMACLRMVSHPHRHSWGHRC-NWPRRQ 124
G + LR + HP H WG C + P+ Q
Sbjct: 60 GQVQLLRHIPHPRMHHWGSLCTHIPKHQ 87
>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 103 ARAAEERLPAGPIAPVAPTVPVGMGNHPEASHAAKE 210
A AA LP +AP AP +PV + P A + ++
Sbjct: 286 AEAATTALPTPSLAPAAPALPVPTSSLPLAKASLRQ 321
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -3
Query: 192 CLRMVSHPHRHSWGHRCNWPRRQPFLRR---TCLYMSRTAQAWRR 67
CL HP ++ H C + R P+L TCLY S A + R
Sbjct: 517 CLYTRQHPWLYTRPHACLYTRPHPWLYTRPYTCLYTSPHAWLYTR 561
>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1243
Score = 26.6 bits (56), Expect = 3.1
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = -3
Query: 213 RLLGSMACLRMVSHPHRHSWGHRCNWPRRQPF--LRRTCLYMSRTAQAWRRNKLGTDPFR 40
R+L + A L+++ R N PRR P RRT L R RR GTDP
Sbjct: 856 RILFTTAALQLLLRHARLLSRGMGNHPRRLPLPVARRTTLRCHRGRGPRRRLGTGTDPLL 915
Query: 39 LGLEGGCARSPSC 1
++P C
Sbjct: 916 YTRSNTEEKAPLC 928
>SB_47682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +1
Query: 22 PALKP*PERIGTQLIPP----PCLRRATHVKARAAEERLPAGPIAPVAPTVPVGM 174
P P P L PP PC A ++A A +++P P P+AP VP+ +
Sbjct: 104 PLAPPVPLAPPMPLAPPVQQAPC--GAGPMQAPCAGQQMPLAPPMPLAPPVPLAL 156
>SB_34024| Best HMM Match : VLPT (HMM E-Value=3.7)
Length = 368
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 85 RATHVKARAAEERLPAGPIAPVAP 156
+AT K R ER+P G +AP+ P
Sbjct: 266 KATTNKYRGEGERMPKGSLAPLGP 289
>SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
Length = 1311
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 127 PAGPIAPVAPTVPVG 171
P GP+ PV P PVG
Sbjct: 1120 PVGPVGPVGPVGPVG 1134
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 127 PAGPIAPVAPTVPVG 171
P GP+ PV P PVG
Sbjct: 1123 PVGPVGPVGPVGPVG 1137
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 127 PAGPIAPVAPTVPVG 171
P GP+ PV P PVG
Sbjct: 1126 PVGPVGPVGPVGPVG 1140
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 127 PAGPIAPVAPTVPVG 171
P GP+ PV P PVG
Sbjct: 1132 PVGPVGPVGPVDPVG 1146
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 127 PAGPIAPVAPTVPVG 171
P GP+ PV P PVG
Sbjct: 1144 PVGPVGPVGPVGPVG 1158
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 127 PAGPIAPVAPTVPVG 171
P GP+ PV P PVG
Sbjct: 1147 PVGPVGPVGPVGPVG 1161
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 127 PAGPIAPVAPTVPVG 171
P GP+ PV P PVG
Sbjct: 1150 PVGPVGPVGPVGPVG 1164
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 127 PAGPIAPVAPTVPVG 171
P GP+ PV P PVG
Sbjct: 1153 PVGPVGPVGPVGPVG 1167
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 127 PAGPIAPVAPTVPVG 171
P GP+ PV P PVG
Sbjct: 1156 PVGPVGPVGPVGPVG 1170
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 127 PAGPIAPVAPTVPVG 171
P GP+ PV P PVG
Sbjct: 1135 PVGPVGPVDPVGPVG 1149
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 127 PAGPIAPVAPTVPVG 171
P GP+ PV P PVG
Sbjct: 1138 PVGPVDPVGPVGPVG 1152
>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 124 LPAGPIAPVAPTVPVG 171
+P+GP P PTVP G
Sbjct: 469 VPSGPAVPTGPTVPSG 484
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 112 AEERLPAGPIAPVAPTVPVG 171
++ +PAGP P P VP G
Sbjct: 459 SDPTVPAGPTVPSGPAVPTG 478
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 124 LPAGPIAPVAPTVPVG 171
+P+GP P PTVP G
Sbjct: 481 VPSGPTVPSGPTVPSG 496
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 124 LPAGPIAPVAPTVPVG 171
+P+GP P PTVP G
Sbjct: 487 VPSGPTVPSGPTVPSG 502
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 124 LPAGPIAPVAPTVPVG 171
+P+GP P PTVP G
Sbjct: 493 VPSGPTVPSGPTVPSG 508
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 124 LPAGPIAPVAPTVPVG 171
+P+GP P PTVP G
Sbjct: 499 VPSGPTVPSGPTVPSG 514
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 124 LPAGPIAPVAPTVPVG 171
+P+GP P PTVP G
Sbjct: 505 VPSGPTVPSGPTVPSG 520
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 124 LPAGPIAPVAPTVPVG 171
+P GP P PTVP G
Sbjct: 475 VPTGPTVPSGPTVPSG 490
>SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 2 HEGLRAHPPSSPSLNGSVPSLFL--RHACAVR 91
H G P +P L G+VPS+ + AC+VR
Sbjct: 827 HNGSEEAEPKAPELPGAVPSVSIVTGSACSVR 858
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 211 PPWQHGLPPDGFP 173
PPW+ LPP G P
Sbjct: 1329 PPWELPLPPSGLP 1341
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 81 QAWRRNKLGTDPFRLGLEGGCARSPS 4
QAWR+N +PF +G G + P+
Sbjct: 240 QAWRKNHPKINPFDMGEGGTSTQEPT 265
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 129 RQPFLRRTCLYMSRTAQA 76
R P LRR C Y+ RT+++
Sbjct: 212 RNPCLRRKCAYIKRTSRS 229
>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
Length = 975
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 165 RHSWGHRCNWPRRQPFLRRTCLYMSRTAQAWRRNKL 58
RH +R N + R C+ R A+AWRR +
Sbjct: 19 RHQCCYRLNVKKEVDVGRPLCMRCYRYARAWRREHM 54
>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
Length = 420
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 274 FFFLRLISVLLNQIIIFYF 218
FFFL LI + + Q +I YF
Sbjct: 164 FFFLPLIIICITQSVIVYF 182
>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1250
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/51 (29%), Positives = 19/51 (37%)
Frame = +1
Query: 70 PPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPEASHAAKEALKS 222
PP K + P+A APT PV + + S A A KS
Sbjct: 820 PPAPEHDKMEKTNTGSKSGGGSPLAVTAPTFPVDLSSSGTESQKATLAAKS 870
>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
Length = 1215
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 91 THVKARAAEERLPAGPIAPVAPTVPVGMGN--HPEASHAAKE 210
+HV+ R +P + P +PT +G G P A+++++E
Sbjct: 334 SHVQTRRPSVPVPVVHVTPDSPTRKMGTGGMWQPNAANSSEE 375
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,015,498
Number of Sequences: 59808
Number of extensions: 143103
Number of successful extensions: 509
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 290602631
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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