Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N05
(281 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 0.71
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 3.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 3.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 3.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 3.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 3.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 3.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 3.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 3.8
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 20 5.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 20 6.7
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 19 8.8
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 19 8.8
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 19 8.8
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 19 8.8
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 19 8.8
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 0.71
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = +1
Query: 49 IGTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPEASHAAKEALKS 222
+ + PPP + A R+P P+ PV VPV N +E L S
Sbjct: 760 LSVSIPPPPSAQNVPQNTNSQAIPRIPILPMIPVY-CVPVPQVNDSTILSPVREKLSS 816
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 3.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 280 FFFFFLRLISVLLNQIIIFYFLAPP 206
++FF L + VL++ + + F PP
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPP 220
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 3.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 280 FFFFFLRLISVLLNQIIIFYFLAPP 206
++FF L + VL++ + + F PP
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPP 220
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 3.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 280 FFFFFLRLISVLLNQIIIFYFLAPP 206
++FF L + VL++ + + F PP
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPP 220
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 3.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 280 FFFFFLRLISVLLNQIIIFYFLAPP 206
++FF L + VL++ + + F PP
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPP 220
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 3.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 280 FFFFFLRLISVLLNQIIIFYFLAPP 206
++FF L + VL++ + + F PP
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPP 220
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 3.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 280 FFFFFLRLISVLLNQIIIFYFLAPP 206
++FF L + VL++ + + F PP
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPP 220
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 3.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 280 FFFFFLRLISVLLNQIIIFYFLAPP 206
++FF L + VL++ + + F PP
Sbjct: 264 YYFFNLIVPCVLISSMALLGFTLPP 288
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 3.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 280 FFFFFLRLISVLLNQIIIFYFLAPP 206
++FF L + VL++ + + F PP
Sbjct: 264 YYFFNLIVPCVLISSMALLGFTLPP 288
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 20.2 bits (40), Expect = 5.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 280 FFFFFLRLISVLLNQIIIFYFLAPPWQHGLPPDGFPS 170
F F F++ +S N F L W +PP G P+
Sbjct: 306 FNFAFIKNVSRDSNSSD-FKKLVDNWMTYMPPSGIPN 341
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 19.8 bits (39), Expect = 6.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 280 FFFFFLRLISVLLNQIIIFYFLAPP 206
++FF L + VL+ + + F PP
Sbjct: 233 YYFFNLIVPCVLIASMAVLGFTLPP 257
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 19.4 bits (38), Expect = 8.8
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 145 PVAPTVPVGMGNHPEAS 195
PV VPV GN P S
Sbjct: 114 PVPVPVPVYYGNFPPRS 130
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 19.4 bits (38), Expect = 8.8
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 145 PVAPTVPVGMGNHPEAS 195
PV VPV GN P S
Sbjct: 114 PVPVPVPVYYGNFPPRS 130
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 19.4 bits (38), Expect = 8.8
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 145 PVAPTVPVGMGNHPEAS 195
PV VPV GN P S
Sbjct: 114 PVPVPVPVYYGNFPPRS 130
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 19.4 bits (38), Expect = 8.8
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 145 PVAPTVPVGMGNHPEAS 195
PV VPV GN P S
Sbjct: 347 PVPVPVPVYYGNFPPRS 363
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 19.4 bits (38), Expect = 8.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 173 WETIRRQA 196
WE IRRQA
Sbjct: 22 WEEIRRQA 29
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,879
Number of Sequences: 438
Number of extensions: 1505
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 5494764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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