Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N05
         (281 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39680.1 68417.m05614 SAP domain-containing protein contains ...    28   1.1  
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ...    27   1.9  
At3g29630.1 68416.m03726 glycosyltransferase family protein cont...    26   3.4  
At1g56020.1 68414.m06431 expressed protein                             26   4.5  
At5g45330.1 68418.m05564 expressed protein ; expression supporte...    25   5.9  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    25   5.9  
At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative ...    25   7.8  

>At4g39680.1 68417.m05614 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 633

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 55  TQLIPPPCLRRATHVKARAAEERLPAGPIAPVAP 156
           T L PPP L +  HV      ERLP  P  P+AP
Sbjct: 562 TALPPPPPLAKPPHVV-----ERLPLPPPPPIAP 590


>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
           (CS13) ribosomal protein S13 precursor, chloroplast
           Arabidopsis thaliana, PIR:S59594; identical to cDNA
           ribosomal protein S13 GI:1515106
          Length = 169

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 186 RMVSHPHRHSWGHRCNWPRRQPFLRRT 106
           +MV+ P  HS    CNW +  P  R T
Sbjct: 3   QMVAMPVAHSLSLICNWAKSNPLSRNT 29


>At3g29630.1 68416.m03726 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 448

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 247 LLNQIIIFYFLAPPWQHGLPPDGFPS 170
           +++   I  F AP  + G PP GFPS
Sbjct: 135 IISAAFIAMFFAPRAELGSPPPGFPS 160


>At1g56020.1 68414.m06431 expressed protein
          Length = 398

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 14  RAHPPSSPSLNGSVPS 61
           R HPPS+PS++GS  S
Sbjct: 259 RNHPPSTPSVDGSSSS 274


>At5g45330.1 68418.m05564 expressed protein ; expression supported
           by MPSS
          Length = 571

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 40  PERIG-TQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGN---HPEASH 198
           P  +G TQL  PP L   +   +  +E +L A  I  + P+ P  +G     P+++H
Sbjct: 277 PSPLGQTQLHTPPGLASVSSNLSPPSEAQLSAPNIQKIYPSAPQAIGKVVYDPQSNH 333


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +1

Query: 67  PPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPEAS 195
           PPP      H+        +P GP++   P   +G G  P  S
Sbjct: 196 PPPSGMHGGHLSNGPPPSGMPGGPLSNGPPPPMMGPGAFPRGS 238


>At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative /
           3-ketoacyl-CoA thiolase, putative similar to
           3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
           [Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
           GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
           contains InterPro accession IPR002155: Thiolase
          Length = 462

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 69  RNKLGTDPFRLGLEGG 22
           RNKLG DP ++ + GG
Sbjct: 372 RNKLGLDPEKINVNGG 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,567,609
Number of Sequences: 28952
Number of extensions: 99837
Number of successful extensions: 342
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 241748928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)