Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N04
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0106 - 13460882-13462086,13463452-13463629                       28   3.5  
01_06_0373 - 28841462-28842850                                         28   3.5  
07_01_0021 - 133549-133628,133780-133824,133850-133858,134513-13...    27   4.6  
02_01_0243 - 1601977-1602834,1602857-1603063                           27   4.6  
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589...    27   4.6  
06_03_0400 - 20420257-20421837                                         27   8.0  
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965...    27   8.0  

>07_03_0106 - 13460882-13462086,13463452-13463629
          Length = 460

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 139 HQLWVVQSPPADRAVRLSREPLEPGPPIQR 50
           H+L V+   PA R  R +  PL P P   R
Sbjct: 127 HRLRVIDGDPAPRLARTTAAPLSPDPAFLR 156


>01_06_0373 - 28841462-28842850
          Length = 462

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 133 LWVVQSPPADRAVRLSREPLEP 68
           LWVV+SPP+D   +   +P EP
Sbjct: 286 LWVVRSPPSDDPAKKFDKPPEP 307


>07_01_0021 -
           133549-133628,133780-133824,133850-133858,134513-134656,
           140098-140391,141324-141908,142034-142198,142364-142406
          Length = 454

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 416 LFMRCHLLIVINECCESRTAENIV 345
           L   CH +  +NECC SRT +N +
Sbjct: 185 LLEACHKIDPVNECC-SRTCQNAI 207


>02_01_0243 - 1601977-1602834,1602857-1603063
          Length = 354

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 160 MKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVAD 8
           MKS   Y  +W+  +   +  VRL R  L PG     E   + Y + ++ D
Sbjct: 249 MKSTEPYMDVWIAAAAGGENWVRLLRVELPPGHYYSGEVKPHGYGKAVLDD 299


>01_05_0416 +
           21956050-21956512,21958001-21958065,21958772-21958933,
           21959006-21959107
          Length = 263

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -2

Query: 244 RELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPG 65
           ++L   L     +R  + HRS+  ++ G  S   +  L   +SP   R    SR    P 
Sbjct: 2   QQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQ 61

Query: 64  PPIQRESTGNAYRRP 20
           PP  ++ST  + RRP
Sbjct: 62  PP--KDSTARSGRRP 74


>06_03_0400 - 20420257-20421837
          Length = 526

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 175 PSRRGMKSGIEYHQLWVVQSPPADRAVRLSRE 80
           P R+GM   I+Y   W  +  PA+  ++  R+
Sbjct: 414 PHRKGMLYNIQYITFWFGEGAPAEAPIKWIRD 445


>04_04_1630 -
           34896021-34896143,34896329-34896403,34896500-34896556,
           34897176-34897352,34897426-34897492,34898043-34898101,
           34898188-34898241,34898455-34898604,34898709-34898918,
           34898980-34899039,34899399-34899527,34899616-34899720,
           34899935-34900024,34900630-34900695,34901047-34901115,
           34901348-34901467,34901572-34901634,34901681-34901817,
           34902070-34902160,34902298-34902463,34902700-34904172,
           34905666-34905940,34906322-34906819,34906996-34907145,
           34907840-34907911,34908006-34908266,34908478-34908558,
           34908745-34908996,34909323-34909382,34909602-34909853,
           34910385-34910549,34910589-34910849,34911267-34912307,
           34913398-34913457,34914055-34914165,34914448-34914534,
           34915227-34915300,34915397-34915490,34915644-34915689,
           34916397-34916521
          Length = 2501

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 115 PPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVADLV 2
           PP+D   R   EP  P PP     +G AY  PL   +V
Sbjct: 316 PPSDYVRRRLLEPPRPPPPAAVNPSGKAY-TPLEQQVV 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,247,167
Number of Sequences: 37544
Number of extensions: 182044
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)