Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N04
         (416 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi...    29   0.95 
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea...    28   2.9  
At2g46300.1 68415.m05759 expressed protein                             27   5.1  
At2g40095.1 68415.m04928 expressed protein                             27   6.7  
At2g41010.1 68415.m05065 VQ motif-containing protein contains PF...    26   8.9  
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote...    26   8.9  

>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile: PF00515 TPR Domain (5
           copies)
          Length = 1064

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 211 SNRCCRLHRSQCPSRRGMKSGIE 143
           ++RCC ++ S+C ++ G+KS +E
Sbjct: 716 ASRCCIINVSECANKEGLKSALE 738


>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
           family protein similar to Sec31p (GI:13928450)  {Oryza
           sativa}
          Length = 969

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 97  VRLSREPLEPGPPIQRESTGN--AYRRPLVADL 5
           V +  EP+ P P +Q   T N  A+++P+VA L
Sbjct: 835 VAVQPEPVAPPPTVQTADTSNVPAHQKPIVASL 867


>At2g46300.1 68415.m05759 expressed protein
          Length = 252

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 145 EYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRP 20
           +Y    V+Q PP  R   +S  P  P PPIQ++    A   P
Sbjct: 3   DYQMNPVLQKPPGYRDPNMSSPP-PPPPPIQQQPMRKAVPMP 43


>At2g40095.1 68415.m04928 expressed protein
          Length = 209

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 259 FALYLKPTFQSIND--LPAALLRDVTAPRT*TMFSAVRDSQHSFITI 393
           F L   P F ++ D  LP+ALL   ++P T +      D +HS I I
Sbjct: 35  FLLVSAPIFLAVADALLPSALLHRFSSPATLSSHLTNYDFRHSLIDI 81


>At2g41010.1 68415.m05065 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 238

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 271 LKPTFQSINDLPA-ALLRDVTAPRT*TMFSAVRDS 372
           L  TF   NDL A AL   VTAP T T  SA  DS
Sbjct: 26  LSDTFSHDNDLLARALHTTVTAPHTLTPSSAFFDS 60


>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor protein
           kinase-like protein GI:10177178 from [Arabidopsis
           thaliana]
          Length = 1045

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -2

Query: 274 SGRARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIE 143
           SG   + P ++ ++      N+N C  L    C S  G  +G++
Sbjct: 638 SGPIPSTPFFKTISTTSYLQNTNLCHSLDGITCSSHTGQNNGVK 681


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,863,201
Number of Sequences: 28952
Number of extensions: 136685
Number of successful extensions: 305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)